Gene detail

Detailed information of Actinostola_05705 in Actinostola sp. cb2023

Genomic Location: scaffold561_size279227:53169...89749
NR annotation: no NCBI-NR hit recorded
Species Actinostola sp. cb2023 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Actinostola_05705

ATGGTAGACCACGAGAACGACGCACTGTTCGACGCTCTCGCTAAAATCGAAAAATTAGCGAAGGCGAAGGATGAAGAAACCGTAAACAACGCTACTCAAATCACCAAAACAGAAAAAGGGGGCGGTGGTGCAAAACAATATCAGCCCACGAGACCTCGCGTACGTCCCGCTGTGTACGAGGGGACAACATCCTGGGAGGATTACGAGGCCCAGTTCGAAATGGTCGCTGACCTTAATGATTGGAATAGTGAAGAGAAAGCCGCCTACCTCGCCGTGAGCCTTGTAGGACAGGAGCGAACAGTCCTTGGTGACCTAAGTGGCGAAGAGAGACGTAACTTTAAAAGCCTGACAGCGGCGCTCGCAACACGGTTCGGAACTGAAAATAAAACCGAGATGTTCAGAGTCAACGTAAAGAACCGCCAGCGGGAGAAAGATGAGAGTCTACCTGAGTTGGCACAGGCCATCAGGCGCTTGACCCGTCAAGCCTATCCAATCGCAGCAGTAGACTTACGTGATATCCTTGCCCGAGACTACTTCCTAGACGCTATAACGGAGACAGTCATGCGATGGAAGATACGTCAAGCACGACCAAAGTCACTAAACGAAGCACTGGGCGTTGCCGTAGAGCTTGAAGCATTCATGAGCGCTGAGAAACAACGCCAAAGGTCAGCGAGAGCCGCTCAAGTTACAACGAACAGCGCCGAGAACGACAAAAAAAAAATGAATGAGGACCTGCGCGAGGAGATAGAGGAGTTAAAGCGCCTGGTTCAAGGCCTTGGCGCTGTGCAACAGAACCACCAACGCTTTCGAGGAGACGGATGCTTGGCTTGTGGCGATAAGAACCATCTTCGACGGACGTGGCATGTGCAAAGTTCGCGTCGGGAAGATCGTAGCCCTTCATCCAGTGTGGTGGCAGATATCGAGCCAGAAGGCATACTTGGTCTGGATTTCTTGCGCACCTTTGACGGGGAGCTCCTTTGCAAAAATGGTTCCTGTGAACTCCAATTTGATCCTGCAACTGAGTCCAGCGAACAAGGATGCCGTCGAATCGTGGTGGAAAGCACAACCGTCATTCCACCGGGAAGCGAACTAATCGTACCATGGAGGTTCATTGACCCGCGGTCAAGTGGCGGCATGGGCGTGCTGGAACCTTCAGTACGATTCTCAAAGACACAAAGTCTCCTACTCGCAAAAACGCTGGTCAACACGGAAAAGGAAGTCGTGCCCTTAAGAGTGTTAAACGTGACCAACACACCCTGCATATTGTATAAAGGGACTGTGGCCGCATCGTGCGAGGACGTTATTGAGGTCAACTCACAGTTTCGCGAAATGAAGGAGGAACCAGTCCGCTGTGTTAACAGGGAACCAACGAGGTGCAGCACGGCTGTGCCAAAGCACCTGGAAGACATGTTTCAGAAGAGTGGCAACGAACTTAGCAATGTCCAACGAGAAAAGCTCAGTGCACTGTTGATCGAGTATGCTGATATCTTTGCTTGTTCCCCTGGCGACCTCGGCAGGACGAACCTTGTTGAGCATCGAATAAACACCGGCGATACCATACCGATAAAGCAGCCAGCTCGCCGCCTACCAATGCACAGACGAGCGGAGGCAGAGGAACACGTAAAGAAGATGCTGAACGATGGAATCATCGAGCCATCCTCTAGCGCTTGGGCATCACCGATTGTCCTCGTTAAGAAGAAAGACGGGTATACACGGTTCTGCGTCGATTACCGGAAACTGAACGAAGTTACTCTCAGGGACTCGTACCCATTACCATTGGCAGACTCGTGCTTTGACGCTCTGACGGAATCACGATGGTTCTCTACGCTGGACCTCTCAAGTGGCTACTGGCAGGTCGCCTTAGCACCCGAGGATCGTGAGAAGACAGCTTTCGCTACCGGAAGCGGAGGACTCTATCACTTCGCTGTAATGCCATTCGGATTGGTAAACGCTCCAGCGACTTTTGAAAGATTCATCGAGAAAGTGCTGGCTGGGTTACCCTGGGAGGTGTATCTGGCATACCTCGACGACATCATCGTCCATGCGGATACCTTTGAAGCAGAAATAGTAAGGCTGCGTGACGTCATGGAACGTATGAGGAATGCTGGAGTTAAGCTAAACCCGAAGAAGTGTCGCCTTTTCCAGCAGTCAGTGTACTTCCTAGGTCACGTAGTTAGCGCCGATGGCATCTCCACAGACCCCGAGAAGAACCGCGAGCGGTAA

Transcript

Actinostola_05705

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR053134 all species →	Family	RNA-directed DNA polymerase homolog	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24559 all species →	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for Actinostola_05705. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Actinostola_05705.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.