Gene detail

Detailed information of Actinostola_10150 in Actinostola sp. cb2023

Genomic Location: scaffold146_size563387:152358...166722
NR annotation: no NCBI-NR hit recorded
Species abbreviation ASP2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Actinostola_10150

ATGAATACCAAGAAGAAACTTCTAGAGAAGCGACTCGAATACTTCAAAGACGAAGTAAACCCAAGAGACGTTATTCCTTTATTGAAATGTCTGACGATTGAAGACAAACAAGAAATCGAGTGCCAACAAAACCTACATGGTGCAATTCGCGCGTTGGGGACACTTGTGGATCGCCTTAGACGTAGAGATAACGGCTTTGAGCAGTTTGTTGTGGCGCTACGTCAACAGAGTCTCGATCACGTAGCACAGTTACTTGATCCACTTGAATTAGTTGACCAAAGTGATGCGTTGAATGAAGCGATCATTGACAATGGAAAATTCCAAATCATTGGCACAGTAGTAGGCAACCATTCAATTACTTCAGTGTCTGTTTATTTAATAGATGTTGAAGTGAATGGACAAATCACGTGCACCAGTAACCAGGGGAACGAGAGAAATTTGGAGTTTGAGAAGATGGTAGCCGAAGAGTACAAATCAACCACATATGAACACTCGTGTAAGATCAGGAAAATGTTTAAAAAGGAAATGCCACAAGGAATTGAGTTTGTCAGAACCAAGCAGAATGCACATGACATCAACAAAACTGCAGAGAATGCAAAAGAAAAACAAGAAGAAAACAAAGACAAGGACACGAGCGAAGAAGCGTCGACAAGCAACGAATCAAACTCCAATGACATCGACGCAGACGCAGAGGAAGTTGATTGGGACGACTCTTTCAAAGTGGTCTTTCGTCTAACAAGCTCAGAAGTCGCTAAGAAATTCTGGGATATGTACATGAACCATGAGCTTGAAGCAAAGATCACTAAGATCGTGGTTTGCGGTGCTCTCCAGCAAACGAACGGCACACTTGACGAGGTCGGTGATCTGAAATTGAACCTGAAAATTGTTGAAGAAGATTTCCAAGAAATCGTGGACTTTTTCGAAAGAAGCAACGGGCCATCTGAACTGCTGAACGAAATGGATATCAAAATTCCAGAAGTGTTGCTGGAAAGTCACAGAAGTAGCGTCCAAAATCGAACCTTGCAGCTTCGTGAATACCAAAAAGAACTGGCCAACCCAGCTATCAATGGGAGAAATACCATCATATGTGCACCAACCAATAGTGGCAAGACTTTTGTTGCGATGGAGATCGCAAGGTTACATCTTGAAAAGTACGGCAAAGACAGTGCCGGGGAGACAGAACAGCAGTCCAAACTTCCACAGATTGTAGGTCTGACAGCATCACTTGGAGTAGGGAGATCCAACGAATCGGAAAAAGCCCAAAACCACATCTTGCAGATTAGCGCCAACATGGATGCATGGTGCATCAGTACCGTACAAGACAACGTCGATGAACTGGAGAAAAACCTTTCGGAAGGAGTTCCAAGACGAAAGCTCGAAAAGGTTGACCAGGTCGCTAACGTTTTTGAGAAGGTCATTGTGCAGGTCATGGGAAAGATCGAGAAAGCTGCTCAAAACTTCTCTGCCAATCCCATTGGAGCGCCTGCAGACAGAGTTGGTCAGCAGTACCGTCAGTGGGTGGAAAGCCTTGAAAATGACGCAGTAGCGAAAGGAGGAATGCGCGACGTCATTACGTATGCAAAGCATCTTAGAAGGACGCGCCCGCACAAGTGTAGTAGGTACCACATTGCCCTTCTCATCAACGATACAGTGCGCATCAAGGATGCCTTGAAATACCTTGAAGAATGCTTTGAACAACTTGATCAAACCAAGTTCCAACACTCAGACAAAAAGCTGCAAGACCTATACGAGAAAGCCAGAGATGGAATAAAAGGTCGTATAGAAAAGGCCGAGCCAACGAACCCAAAGTTGGAAAAACTTAAAGAACTCGTCCTTAAGTTTCACGAAGAAGACGAGAACAAAGAGAGAAGTAATAAAACCAAAGGAATCCTGTTCACAAGGACCAGGGATTCTACAATGGGTCTCAAAGGATGGATTGAAGAAACACCAGAACTCCAAGCAATTCTCAGACCCAAGATTCTAGTAGGCGCTGGAAATGGAGAAGTTGGCATGACTCAAGGAGAACAAGAAGCCATCATCGAAGAATTCAAAAAAAGTGAAGTCAACATCTTAATCGCAACAACCGTGGCCGAGGAGGGACTGGACATTGGAGACTGTAACTTTGTCATTCGATACAACATGGCTGGTAACGAAATCTCCAGCGTGCAATCACGTGGTCGTATCAGAGCTGATGACGGTAATTACGTGTATCTTGGTGACAGTAGAACAAAGGGAGTGAACCGTGAACGCCTAAATCAGTACAGAGAAATCCTGATGACAACTGCAGTAGCTGAGGTACAGCAAATCTGCCACGAAGACTACTTGACGAAGGAGCCGCCCGATGAAACGGGAGCCTGCATCAGTCACACTATCATCAAGGATATACAATTGAAAGACGTCAGAAAGCTACAAATGAAGAACTTCTTGAATACAAAGAAAATCAGGTCCAAATTGCAGATCGATGACGTCAAATTTTTCTGTAGACAGTGCAACGCAGTGGCCTGCCAGTTGGATGACTTCCGAAGACTGAAGGATAATTATCACGTGATCTTGAATAAAGAATTCAAGCTCAAAATCAATGTGAAGCCAAGGAAAAATTCAAAGAAAGTCGATGATATATTGATAGAATCAAAAGATGCTGATTGTATGTATCCACCCACACAGGTTCATTGCATACACTGTGATGAAGATTGGGGAGTAACGGTCAAGATAGATGGCCTCACTTGGCCTTGTCTGAAAGTAAGAAGCTTTGTTATCGAGGACAAAGGACAGCGAAGAACCTACAAGAAGTGGAGCGAATTTCCTTACGAAATCCCCGAAGCTGGATTGTCAGAAATCATCGAAATGGACGACTCCTTGGATAATGATGATTTGGATCTTGATGTGTGA

Transcript

Actinostola_10150

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11648 all species →	RIG-I_C-RD	C-terminal domain of RIG-I	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF16739 all species →	CARD_2	Caspase recruitment domain	Domain	Interproscan
PF18119 all species →	RIG-I_C	RIG-I receptor C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR021673 all species →	Domain	RIG-I-like receptor, C-terminal regulatory domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR031964 all species →	Domain	Caspase recruitment domain	Interproscan
IPR041204 all species →	Domain	RIG-I-like receptor, C-terminal	Interproscan
IPR038557 all species →	Homologous_superfamily	RIG-I-like receptor, C-terminal domain superfamily	Interproscan
IPR051363 all species →	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074 all species →	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12647	IFIH1, MDA5; interferon-induced helicase C domain-containing protein 1	EC:5.6.2.6	Pattern recognition receptors	ko04054	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.