Gene detail

Detailed information of Actinostola_14049 in Actinostola sp. cb2023

Genomic Location: scaffold322_size401494:182720...204830
NR annotation: no NCBI-NR hit recorded
Species abbreviation ASP2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Actinostola_14049

ATGTATTCGATTGATATGGACACCGACGGTGCCGGTAAACTTTCCCAGAGCTCACAGGCTATGGCTAGTGAGTCTGGCAACAAGTTTACAATCCCTGGTATTCTACATTTTATACAACATGAGTGGGCTAGATTTGAAATGGAGAGGGCTCATTGGGAAGTTGAGCGAGCCGAACTACAGGCTAGAATAGCTTTTCTACAGGGGGAGAGAAAAGGACAAGAAAACCTTAAACATGATTTAATACGAAGAATAAAAATGTTGGAATATGCCTTAAAACAGGAAAGAGCAAAGTATCACAGACTAAAGTATGGTACAGACATTGGAGGACAGGATAAATCTCTAAAAGAACAAGAACAAGCCAATCAGGATGCACAACCAAATGATGTCATAACCAACAATGGTAGTAACAGTAAACCTAATATGAACTGGCGGCAAGGCAGACAGCTGCTAAGACAGTATTTACAAGAAGTTGGTTACACAGATACCATCTTAGATGTACGTTCTTCTCGAGTGAGGTCCATTTTAGGACTATCAGCACCAGCGCCAGAAGTTCCTCCAATACAAATGAATGGAACTGCTCCTAGAACACCTGAGGAGGGCCATGAATTTGAAGATGAACTACAAGTGCAACATCCAAAGCCAATCCATATTCGACAGCCAATTCAGGGAGGTCATGAAATTGTCAATCCTACTCCAGTCAGAAGAGCCCCCACTCAGCCACCAATCAGTCAGGTTGGGAAAAAAGCTGCTGAAGAAGAAATTCAATCAGAAGCAGATGTGATGGCTGAGTTTAATTTTCTTCATGATAATAACATGGATGGTGAAGATGATGATGATGATATGGATGATGGCGGCAGTGCTGATGATGAGTCAGATGAACGTGAAGAATTTTGTAATGAAAGAAGACTAATTAAAAAGCCTAAAACAGAACATGCCAAGACAGCACAGGCAGGGTCACAGGATGAATGGGGTGTTGACCAGAACTTGCTGGCCAAGTTGAAACAGTACAAGTCAGAAAAGGAAAAGGAGAAAGAAAAGAAGACAAAAATAAGTCAAAAACGACCACCTAAACTAGCACTCCAGGCTATGCTTGCTAATCTAAGTGGTGAAGAAGAGATGATTCCTTCCACTTCATCAACACCTGCAATCACAGGTCCTTCCCCTGTGAGGCTGAGTGGGTCACGATCAATCTCTGAAATACCCCCATCAATAGGAAGTATGTCAGTATCACCTAAAGGCTCCCCAATCAAGAGTCAAGGACCAGCAGGCTCTCCTCCTGCAGACGAGCCGTTTGAAAAACCATTAGGTCTTGGTGATCTAGCAGATCTAACTGTTATAAATGAAGCGGAGCCACTTTCCTATGAGATTTCCAATAAGGAGGAATTCAGAAAAACTTGGAACCCAAAATTTACTTTGAGAAGAAGTAATGTACTTGACGTGGAACCCATATATACCTTCCGAGGACACACCAATGCAGTGCTGTCTGTTGTGATCAGCTCTACCAGTGATATGTGTTTCAGTGGTGGTGCCGATTCAGCTATATTTTGTTGGAATATCCCTTCATTAGACCTTGACCCTTATGGGCCATACAGTCCTAATGTAAAACGCAATTTACTAGAGGGTCACACTGATGCTGTTTGGGGCCTGGCTGTACAAACCAACTCACTACAGCTACTTTCATGTTCATCTGATGGAACTTGTAAACTATGGAACCCAACTTTGAAGTCTCCTTTGCTGAACACTTTCATACTCGACAAAGAGACAACTGCCATACCAACATCTATAGATTTTTTGCGCATGGAGTCTTCCCAAATGGTAGTATCGTATTCCAATGCATGCTGTGCTGTATTTGACTTGGAAACAGCCACGCCTATTGTACAACTAGATAGTGCTAAAACTTACAGTACTGCAGGAGCTACTCAAATTAATAAAGTAGTAAGCCATCCTACATTACCTGTAACTATTACCGCACATGAAGACAGGCACATCAGATTTTTTGATAATAATTCAGGCAAACAAATCCACTCCATGGTTGCTCACTTGGATTCAGTCACTAGTTTAGCAGTAGATCCTAATGGACTCTACTTACTATCAGGAAGTAAGTGCAACATTGATGTAAATGTGTTGACATTAGTTGCTAACAATGTGTTCATGTCATTAGGTCATGATTGCTCTATACGACTGTGGAATTTGGACACCAAAACTTGTGTCCAGGAAATTACCTCCCACAGGAAGAAGTTTGATGAATCCATATACGATGTCGCTTTCCACCCTTCCAAGCCATATATAGCCAGTGCTGGGGCTGATGGCCTTGCAAAAGTCTTTGTGTAA

Transcript

Actinostola_14049

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF08232 all species →	Striatin	Striatin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR013258 all species →	Domain	Striatin, N-terminal	Interproscan
IPR051488 all species →	Family	WD repeat-containing striatin	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15653 all species →	STRIATIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17608	STRN1_3_4; striatin 1/3/4	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.