Detailed information of Ahemp_000553-T1 in Acropora hemprichii

Genomic Location: scaffold_1:8056415...8066039
NR annotation: XP_029190659.2, very low-density lipoprotein receptor-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O88572Low-density lipoprotein receptor-related protein 6 OS=Mus musculus OX=10090 GN=Lrp6 PE=1 SV=1
O75581Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens OX=9606 GN=LRP6 PE=1 SV=2
C0HL13Low-density lipoprotein receptor-related protein 2 OS=Sus scrofa OX=9823 GN=LRP2 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14670FXa_inhibitionCoagulation Factor Xa inhibitory siteDomainInterproscan
PF12662cEGFComplement Clr-like EGF-likeDomainInterproscan
PF00057Ldl_recept_aLow-density lipoprotein receptor domain class ARepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002172RepeatLow-density lipoprotein (LDL) receptor class A repeatInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR036055Homologous_superfamilyLDL receptor-like superfamilyInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR023415Conserved_siteLow-density lipoprotein (LDL) receptor class A, conserved siteInterproscan
IPR051221FamilyLow-density lipoprotein receptor-relatedInterproscan
IPR000152PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR026823DomainComplement Clr-like EGF domainInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR009030Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR011042Homologous_superfamilySix-bladed beta-propeller, TolB-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22722LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0006898Biological Processreceptor-mediated endocytosisInterproscan
GO:0016324Cellular Componentapical plasma membraneInterproscan
GO:0042562Molecular Functionhormone bindingInterproscan
GO:0043235Cellular Componentreceptor complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K20053VLDLR; very low-density lipoprotein receptor-Membrane traffickingko04131deepkoala

TOP