Gene detail

Detailed information of Ahemp_000772-T1 in Acropora hemprichii

Genomic Location: scaffold_1:10947846...10958053
NR annotation: XP_029200152.2, signal recognition particle subunit SRP72-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Ahemp_000772-T1

GATCAACTTAAGATGGCGACCGCGGCTCCCACCATACCACAACTTTTCACTGAACTGGATCGATTTGGGAAGGATAGAAATTTTGAAAAAGCCCTTAAGATTGCTAATAAAATTTTACAAGAGAAACCCGACGACAAAGAAGCATATCATTGTAAAGTGGTTTGTCTTATTCATAAATCTTGCTTCCGTGAAGCTTTAGATGTCATCAATTCTGCGCCTAAGAAAGGTGTTGACATTGAATTTCAATTTGAAAAAGCTTACAGCCTCTATCGTCTCAATAAAACTCAGGAGGCACTAAATACTTTAAATGCAATTGAGGAACTTAAAGAACATGAAAAGGAATTGAAAGCTCAGCTGTTATATCGACTTGAAGACTACCATGCATGTTTGAAGCTTTACAAAGATTTGATCAAGAATTCTCAGGATGATTACGGAGATGAAAGAGAAACTAATCTTGCTGCTGTCATTGCCGGTGCTGCTCAATGGAAAGGAATGAAAATGGATGAGCTTGGCCTACGAGAGGATACTTATGAGCTGTGTTACAACTCGGCATGTCTTTCGTTGGGAGAGAATGACATTGAAGCTGCAGAAGAAAAGTTGAAGAAAGCAGAAGAGTTGTGTGAGAAAAGTCTAAGAGATGACCCTGATATAGGAGAAGAAGAGTTTGAAGCTGAGATGGGAATTGTCAGGGTTCAGCTAGCTTATGTTTACCAGTTACAAGGAAAGAATGACGAAGCTCAGAAGCTCTATAATCAAGTTCTCAAATCCAAGCCCAATGATCTTGCGTTAGCTGCAGTTGCATCCAATAATGTCATCACACTTAACAAGGATCGTGATGTCTTTGACTCCAAAAAGAAGGTCAAAGCTACCACAGCCGATGAGCTTGCGCACAAACTGACAGCATCACAGCAGCAGACCATGACGTTTAACAGATGCCTCTTGAACTTCCATACCAATCAACTTGAAGCTTGTCGTAACTTGACATCCACCCTGGAAGCAAAGTACCCGGAAAGTGATTTTCCTTGCCTCATGAGAGCCTCCCTCCTACACCGCGAGAAACAATCTGCCAAGGCAGTCGAGGTTCTCAAGaactacgctgaatgtcacgaagactctgccatgaatgttaaactcacgttggttcagctgtatctcgcacaaggtaacattggtgaagcctgcagcacactgcgctccgtgaaagatttggcgtacaaaccaggcgtggtttctgctttggtgacgttgtattcccacattggtgacgtcagtgcagcagtagatatccttgatgaagcagtggagcatgcgcagaagaacaaggatacgatgcgtcaatcagaggttttatctttgatgcgagagaatgtttcattcaaattacagcatgggagagccaaagaagcggtggatatgcttgagaaattacacaaggaagatccaacagatgtgaagactttagcacaactcatcaaggcgtactcttgcgttaatccgaaaaaagcagaatcgtatcctttttaagtcgacaccacttctttgcagttcactttggaaccatctgcgttctttagtttgttgttgtcgttgttttgccatcagtaagaacctgatatttttcaagtggtgatgctgtttccatcttattgcttttttcgttcggctttaagtcaaattgctccagtcgggtcattgttcagtaaggtaaactcgcacttgcacagtagctgttatttcagttattagcggttttgacacataaacgagtttaatgcataggtcatttttcactgtattggcctataagcctcgtctccatgcagtcttaagcaaactgtaaaaacagctattcagtgtctgcgtgtgaattagtactcattaccgcttgtacaaggcatcgtcgttcttttttcgtcctgtctctattgttgttcaagaagcaacatttcaaaagagataaaaataacaccgaacgtctttacgtttcgacctctgaaagactgttttagcttaagtcgcaagaagtcgtcttttcagtgataacaggaagctcaagcaaagaa

Protein

Uniprot

Uniprot term	Description
P33731	Signal recognition particle subunit SRP72 OS=Canis lupus familiaris OX=9615 GN=SRP72 PE=1 SV=3
O76094	Signal recognition particle subunit SRP72 OS=Homo sapiens OX=9606 GN=SRP72 PE=1 SV=3
P49965	Signal recognition particle subunit SRP72 OS=Schistosoma mansoni OX=6183 GN=SRP72 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF17004	SRP_TPR_like	Putative TPR-like repeat	Repeat	Interproscan
PF09976	TPR_21	Tetratricopeptide repeat-like domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026270	Family	Signal recognition particle, SRP72 subunit	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR031545	Repeat	Signal recognition particle subunit SRP72, TPR-like repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR018704	Domain	Tetratricopeptide repeat-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14094	SIGNAL RECOGNITION PARTICLE 72	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005786	Cellular Component	signal recognition particle, endoplasmic reticulum targeting	Interproscan
GO:0006614	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0008312	Molecular Function	7S RNA binding	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan