Gene detail

Detailed information of Ahemp_001994-T1 in Acropora hemprichii

Genomic Location: scaffold_4:301725...307517
NR annotation: XP_015751753.1, PREDICTED: protein jagged-1-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Ahemp_001994-T1

gtccgcgcattatatgtccgaccacatttaggctttggttggacatcagtaaattttgttcggccaatgttcgatgcacatgaccgactgcatgttatttgtagtcctgatattatattccttcttattctattactttgttaatagccagaatttactcacttcaccgtaacagaattggcggaaactactcgcgtgccgccacgttgcaaatgattccaattaatctcggaaagatgccaaatactaaaaacggcttcgcccattggacatcaccttatcatcaccttttcgtcagaaaattgatattttcatacagtggagatttagcatcgagacagttgaaacttgtcaggcagagttttctagctttgatatttctctgcagttgttctcaccaattgttacgctgttgatagtttccgcaatttaaaacgaactgtgttagcagacaaagcgaaaacatgatcttgtcgcttttcagtgttaccgttctcttgtggtgcctaatgGTGCCTTGTGACGGCATGGGCCGGCTGGTAGTGACTTTAAAGAGCTACAGAAATCCAACACATCGGATGAGCAATGGCAAATGTTGCGATCATCTTTTCATTTCCTTCGGCCGTTGCACTCCATGTGACGCTTACTTTAAGTTGCACGTGACGCATATATGTTCAAGAAATACTGGTCACAGCTGCTCAATAGGAAGAAAGAAAACAAACGTGGTCGGCAGACGAGATGACCATCGATTTAATATCAGAAATGAGTTTGGTTTTGATTCGGTGCTTGGCACCATTACAGTAGGCTTGGAAATTTGGGATAAGGACAGAATCTCAAGGGATGACTACGTGGAAGGTCTGCACGCCTCGGTACCTTCTGCCTTGCCGGGACCATACCATAATCCATTTAGGAGGGCATTGACCCTAACTGGTAATCGTGTTACCGTTGAGCTGGATGTGGAATTATACTGTGACAAAAATTATTATGGAGCTGCTTGTGATGTGAAGTGTATCTCGAGGGATGACGACTCACGTGGACACTACACCTGTGATCGCCATGGGCGAAAGATTTGCAAGTCTAATTGGTTTGGAAGCAGCTGCACTCGAAAGTGCGTTCCGCGGGATGACCCACGATCTGGACATTTCTCCTGCGATGAAGAAGGAAACCGAAGATGTCTGAGGAATTGGCAGGGGCCATCTTGTAAGAGCTGCGTCAAAAATTGGTACGGACCACGCTGTTCTACGCATTGTGCTCCTAAGGCGAGCGACAGTCTGGGTCATTACAAGTGTAGATCTGATGGAACGAAACAGTGTCTGCCGACATGGTTTGGCAGCGACTGTCGCAAGCAATGTATTCCTCAAGACGACGACGACAGTGGCCATTACAGTTGTGCCCAAGACGGAAGTAAGATGTGCTTGCATGGCTGGTCTGGTGAGAAATGCACGGTATTCTGCCTTCCCCAGGAAGACGACGAACTTGGTCACTACGCTTGTGACAGCCACGGTAACAAAGTCTGCTATGATGGTTTCGACGGATTCAGTGAAAACTGTTCACTGACTTGTTTGGCAAGCAAGAATAAAACCACCGACGACGGACGGTACAAATGTACTGACAGTGGAGTGATGGTTTGTAATCCGTGGTGGTACGGTCCGAACTGCGACGAATATTGCACAGATTCCAATGACGATGTAAATGGCCATTACACGTGCGATCCACGTGACGGAAAGAAAGTGTGCTTGGAAGGTTGGGCTGGACCAGACTGCCGCTTTTCCCTCTCATGGCAATCTTGATTGAAAACATTGAGCTCCATTTCATGTCTTTGTCGCCGGCGCATCAAAGCTGTAGCTTATGCAGACATTAACAGGGAAACTCATTCATGTCCGTGTGTCATTTTTCAAAATTTAGATTTGTAAGAAAGTTAACGAGCCTCGGCTCAATTGACTTGGAGTTGTAGCTTCAGTTTACTGACTGAACTGAATAAAATCTCAGTCACACTAGAAGGGTTAATGTTTTCTTCTTATTTTCCTTTACGTGAATTAGCAATAAAGGCATCGATTGTTGCAAAAGTAGGCACACTGAAGCTGAGTCATAGGAGCAAAGTAACAGGTTCGAAGCAGCCACACTTTTGGATAAGAAACGACAACGTGGGAGTGAGGTTTGTGTTTTACGTCAAAGCTCTAGCAGCGACAAACGCGACAGGAGCGTCTCAAAACAATGCCTTTGTTACGGGACAGATTTTGCAACCACAGCCTCAGTGTTTTCTTCTTTTATTTGGGGGTTAAACTTCAGCACTCTGCCGTGGCCGGCAGCCAACTCCTCACTCAGCCGTCGCTGGCAGGCAACTCCTTACTCTGCCGTCGCTGGCAGGCAACTCTCTTTTCTACTCTCTAAAAACTAGCGTTTAAGTATGTGCTCGCTGAGATATGATTGGTTAAGGCGCGTAGCAAGTAGCTAAAATTGAGTTAATCACATTGCTAGATAAAGATAAATAACAACAGGAAACGAAGTTTCCGCTGTCCTTTACACTAACACGCGGGGCTAACCGCGGGAAAACTAACACTACAGATAATAACGTGGAAGTGACTAATGTGGTCTGTAATACAACTTTACAGAAAGAGCCGCCAAGGTTTTCAAACAACGTCGGCGGAAAATCGGCTTTTGCCTAACGCATTATCTCGTGCGAAGTCAGCTACGAGAGAAAAGGTTGTTTGTGATAATTAATTCGATTTGCATGTTTCGGTCGTCTTCGAAGTTGTTCAGCATCGTGCGAATATAATACTTTAAATGCAATGAAGCTATTATGCAAATATAGGTGAAAATATTATAAAATATGCTTCAACACCTTTAAAGACCAAAACAATAGCCATTTAAATCTTGCATGTGCATGTGGAAATACGGTTTTTCTCAGTGCTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01414	DSL	Delta serrate ligand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001774	Domain	Delta/Serrate/lag-2 (DSL) protein	Interproscan
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR042635	Family	MEGF10/SREC1/2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24043	SCAVENGER RECEPTOR CLASS F	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007154	Biological Process	cell communication	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005044	Molecular Function	scavenger receptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08612	ADAM25; disintegrin and metalloproteinase domain-containing protein 25	EC:3.4.24.-	Peptidases and inhibitors	ko01002	deepkoala