Genomic Location: scaffold_4:5499860...5505824
NR annotation: XP_029192739.2, uncharacterized protein TM_0508-like [Acropora millepora]
Species Acropora hemprichii · all data for this species · gene families
| CDS |
| Ahemp_002379-T1 |
| Transcript |
| Ahemp_002379-T1 |
| Protein |
| Ahemp_002379-T1 |
| UniProt accession | Description |
|---|---|
| Q9WYX8 | Uncharacterized protein TM_0508 OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=TM_0508 PE=3 SV=1 |
| Q97UU4 | Uncharacterized protein SSO2899 OS=Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) OX=273057 GN=SSO2899 PE=4 SV=1 |
| Q96XY5 | Uncharacterized protein STK_23830 OS=Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) OX=273063 GN=STK_23830 PE=4 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002709 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01661 all species → | Macro | Macro domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR043472 all species → | Homologous_superfamily | Macro domain-like | Interproscan |
| IPR052056 all species → | Family | Mono-ADP-ribosyltransferase ARTD/PARP | Interproscan |
| IPR002589 all species → | Domain | Macro domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14453 all species → | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003714 all species → | Molecular Function | transcription corepressor activity | Interproscan |
| GO:0003950 all species → | Molecular Function | NAD+-protein poly-ADP-ribosyltransferase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0010629 all species → | Biological Process | negative regulation of gene expression | Interproscan |
| GO:0070212 all species → | Biological Process | protein poly-ADP-ribosylation | Interproscan |
| GO:0140289 all species → | Biological Process | obsolete protein mono-ADP-ribosylation | Interproscan |
| GO:1990404 all species → | Molecular Function | NAD+-protein ADP-ribosyltransferase activity | Interproscan |
Ahemp_002379-T1.Genes whose expression across the transcriptome samples of Acropora hemprichii tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora hemprichii, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
