Gene detail

Detailed information of Ahemp_003866-T1 in Acropora hemprichii

Genomic Location: scaffold_8:3217062...3231977
NR annotation: XP_029200143.2, transient receptor potential cation channel subfamily A member 1-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ahemp_003866-T1

ATGGATAGAAATTTCGCTAATGTGACGTTACCGCTAGGGACACCTAATGACGACGAATTGCTCCTACTTCCCGTCAGTCCTGCCCTGAATAGGCGTCAGCGAGCACAGGACTTGAGTCAGCTGTCTCTTAGGTCGGCTGGAAGCTACTTTGGCCGAATCTCGGTGAATGCCTGTCATGATATTGAGGAAGGTCACAGCGAAGAGCATCCCGACAAACTTCAACTAGCTTCCTGGTCTGGTGACGAGGCTGCCGTGGAGAGCATGCTTAACGAAGAAACTGTTGATGTGAATTCCTTGGACCACTCAGGAAGAACTGCACTTCACAATGCTATCCTTGGATGTCACGAAAAAATCATAATGCTGCTCTTGGAGTCTGGTGCCGACACCTCAATTCTGGATAGGAGCCAGGATCCGCCCCTTCACACTGCAGTTCGGACTGGGAACCAGACGCTTGTCAAAGCCCTTCTCAGTGTTACTCAGTGTGATACAAATATCAGAGGAAATGGCTCACAGACAGCACTTCACATTGCTGCTGGACTGGACAACCTCTCCCTTTGTAAAATACTGATTGAAAACGGCGCATCACAAGACTGCTGCGATGACGAGCAGATGACTCCGTTGACAAGAGCAGTGGAAAAAGGAGCCTTTAATGTTGCAGAATTTTTTCTTCACGAAGGCGAGGTTGCGCTCACTGCTAAAGTTGTAGCGCCAAAATGCGAAGAAGTTAAAGAAAATAAGAAACACAATGTGAAAGATCTTCTTGAGAATGTAGATTCAGAAGGCAGCACTTTGCTACACTTAGCAGTGGACAGTGGAAGTGTTAAAACGGTTCAACTGTGTCTGGACCAAGGAGCCATTATTCGACAACCTAAGGAACATGATCGAAGTACTGCATTTCATCTGGCATGCGCAGTAGGCGCCTTGAGGATCGTTCAGCTGTTTGTAACTAAGGATCCTACCATCTCCCGCATCACTTTGATTGACGCCCATGGTCTAACACCTCTGCACTTGGCTGCCATGAATAACCACCCTGATGTAGTGAAATATCTCTTGGATCAGGGTGCCTCACTGGACTCCCCTGACAATGTCCGCCGCACTCCTCTATTCTTAGCAGCTGAGATGGGTGGCACAGAATCTGTCAAAATGCTAATCGACATGGGTGCTGACGTCACTGTCAAAGATGTGGATTTACGATCATGTGTCAGGGTGGCTGTTGGGCATGCAGCGACAATGGAAGTCTTGCTTCAGAAAGAGCAAGCAATTCCGCTAATCACTGACAAGGATATCACGGGGTTTGCTCCTGTCCACTATGCTGCGAAACACGGGCATTTACAGAGCTTCATGTTGTTCATGAAACGAAACAAGAACACTGCCACTGTGACTTCAGACGGTCTCGATACTGCGCTCCACGGCGCTGCCAGATATGGCCGTCTAGAAGTGGTAGACGCGTTGCTATCCGGTCGCAACGTCCGCTCCATCAATGTAAAAAACAGTGAGGGAAAAACAGCTTTGCACTTCGCATGCGCAGAAGGACATAACAGGGTAGCTGAACATTTACTGAAGCTTGGTGCAGCTGTTGAAAGTGATAACAACCACAGAACAGCGCTTCACCTGGCAGCCATGAAAGGCTCCAAGAGATGCACACAATATATTTTGGAATCTCACCCTAAGTGTGTTAACCTCTTTGACAAAAACCAGAACACTGCTTTACATCTTGCTGCGATCTACGGTCATCCTGAAGTCGTGTTCACTTTACTCTCTTCCGAAAAACAAGATATTGTTATGAACAGAAAGAATCAAAACGTGTTAGATGCAGCCTTGGAGGCTCAACAAAAAGACGTTTTGCTTGCTATTACGAGCCACAGAAGGTGGCGCGAGGTGCTAACATCATCTAAACCAGGTCCCATGGCACAGATGAGTGCGCTTGCCATAAAATATCCTGAGGTTGCTAAACGATTCATGGATCAGTGTGTAACAAAAGAAGGAAATCCTGACGGCGAGGATTATAAGATAACGTATGATTTCTCACTGATCCAAGGAGTTCATAAGGCTGGTGAAGATTATTTGATGGTTTTGAAGACAATGCTCTTACATCGTCGTCTCAACTGCTTGACGCACCCCTTGTGCTTCTACATCATGAACACGAAGTGGAAGACATTTGGATTTCAAACGCTGACGGCAAATCTCCTTCTCTATCTGCTATTTGTAATTCCGTTGACTGTCCTCGCCATCTTCATTCGCGCCAATGAGAAAGCCTTGTGTGGTATTAACGAGACCTGGAAAAGAAAGGAATACATTGGTATAGAGGTGCCGTGTATTACGACCAATAAGCTTGTTCAGACTCTGCAATATGCAGTAGCAGTGGTCACCTTGCTACACATGATAAAAGAGCTACTCCAGCTCAGAAAACAGGGAAGGACATATCTTTTGTCCTTGACAAATTATCTCGAGTGGTCGGCCTATGGTTTGACCTTGCTGTATATTTTCCCTCCATGTGATTGCAAGCTCGGATTCAAGCAAGAAATCGGAGCTCTTGCATTGTTCTTTGGATGGATCAATCTTGTCTTGTTCCTCAGAAGGTTGTCGTCGTATGGCCAATACGTCATTATGCTGACAACTATGTTTGCAACTCTAATCAAGGTTTGGATTTTGTTCTTCTTGTTTATCGTGGCGTTTGGCAGCACCTTCTACATACTCATGGATGAAGAGACGCTGTCATACTCGACGTTTCCCAACTCCATGATGACGGTGTTTGTGATGACGCTTGGGGAACTCAACTACGCAGAGGTTTTTATGCCGTGGGATAAACTGGAATATGCTACGCTCACCAACATTCTGTTTTTCATGTTTGTATTGGGAATGCCAATCATCATAATGAATATGCTGGTTGGCCTTGCAGTTGGAGATATTGATAAAATTCAAATGAATGCTGTATTGGATCGATACGTTATGCAGGCGGAATTAGTGTTGGAAATGGAGGAATGGGTTCCTTCTTGGCTCGCAAAACGTGCTAATATCGGAAAATACGTTGAACACCCAAACCAAAAGTCATCTAAGCTCTTTGATAGACTGTTTGGCTTTAGCCGGCCAGGAGACGACGAAGAAGAACACAAATCTTCCCTTGACCATCATCATGTATATCACTCACTGTTGGAGAGAATGGAGGAACAAGAGAGCAGAATCAATGGGATTTACGAAGTCTTGAAGCAAATATCTTCGGTTATGAAGACAGAGAAGGCTAACGTTCCTTCAAAGAGAGTGGGAGACATAAAACCAGGGAGAAGTCATTTCTTCCCCTTTTAA

Transcript

Ahemp_003866-T1

Protein

Uniprot

Uniprot term	Description
O75762	Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens OX=9606 GN=TRPA1 PE=1 SV=3
Q6RI86	Transient receptor potential cation channel subfamily A member 1 OS=Rattus norvegicus OX=10116 GN=Trpa1 PE=1 SV=2
Q8BLA8	Transient receptor potential cation channel subfamily A member 1 OS=Mus musculus OX=10090 GN=Trpa1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00520	Ion_trans	Ion transport protein	Family	Interproscan
PF13637	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR005821	Domain	Ion transport domain	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR052076	Family	Transient receptor potential cation channel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47143	TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04984	TRPA1, ANKTM1; transient receptor potential cation channel subfamily A member 1	-	Ion channels	ko04040	deepkoala