Detailed information of Ahemp_005501-T1 in Acropora hemprichii

Genomic Location: scaffold_13:4330601...4358450
NR annotation: XP_029193411.2, chromodomain-helicase-DNA-binding protein 1-like isoform X1 [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O14646Chromodomain-helicase-DNA-binding protein 1 OS=Homo sapiens OX=9606 GN=CHD1 PE=1 SV=2
P40201Chromodomain-helicase-DNA-binding protein 1 OS=Mus musculus OX=10090 GN=Chd1 PE=1 SV=3
B6ZLK2Chromodomain-helicase-DNA-binding protein 1 OS=Gallus gallus OX=9031 GN=CHD1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00385ChromoChromo (CHRromatin Organisation MOdifier) domainDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF13907CHD1-like_CChromodomain-helicase-DNA-binding protein 1-like, C-terminalDomainInterproscan
PF18375CDH1_2_SANT_HL1CDH1/2 SANT-Helical linker 1DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR023780DomainChromo domainInterproscan
IPR000953DomainChromo/chromo shadow domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR025260DomainChromodomain-helicase-DNA-binding protein 1-like, C-terminal domainInterproscan
IPR023779Conserved_siteChromo domain, conserved siteInterproscan
IPR049730DomainSNF2/RAD5-like, C-terminal helicase domainInterproscan
IPR016197Homologous_superfamilyChromo-like domain superfamilyInterproscan
IPR040793DomainCDH1/2, SANT-Helical linker 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45623CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000785Cellular ComponentchromatinInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0034728Biological Processnucleosome organizationInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0140658Molecular FunctionATP-dependent chromatin remodeler activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11367CHD1; chromodomain-helicase-DNA-binding protein 1EC:5.6.2.-
Chromosome and associated proteinsko03036deepkoala

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