Gene detail

Detailed information of Ahemp_005592-T1 in Acropora hemprichii

Genomic Location: scaffold_14:1065288...1073860
NR annotation: XP_029198539.2, probable E3 ubiquitin-protein ligase makorin-1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q4SRI6	Probable E3 ubiquitin-protein ligase makorin-1 OS=Tetraodon nigroviridis OX=99883 GN=mkrn1 PE=3 SV=1
Q5NU14	Probable E3 ubiquitin-protein ligase makorin-1 OS=Takifugu rubripes OX=31033 GN=mkrn1 PE=2 SV=1
Q9UHC7	E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens OX=9606 GN=MKRN1 PE=1 SV=3

Gene family	Subfamily
Transcription Factors Family	zf-CCCH
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18044	zf-CCCH_4	CCCH-type zinc finger	Domain	Interproscan
PF14608	zf-CCCH_2	RNA-binding, Nab2-type zinc finger	Domain	Interproscan
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR045072	Family	MKRN-like	Interproscan
IPR041367	Domain	E3 ligase, CCCH-type zinc finger	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR036855	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11224	MAKORIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan