Gene detail

Detailed information of Ahemp_006592-T1 in Acropora hemprichii

Genomic Location: scaffold_17:944764...950817
NR annotation: XP_022784772.1, threonylcarbamoyladenosine tRNA methylthiotransferase-like [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q6P4Y0	Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus tropicalis OX=8364 GN=cdkal1 PE=2 SV=1
Q91WE6	Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Mus musculus OX=10090 GN=Cdkal1 PE=1 SV=1
Q5VV42	Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Homo sapiens OX=9606 GN=CDKAL1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00919	UPF0004	Uncharacterized protein family UPF0004	Family	Interproscan
PF04055	Radical_SAM	Radical SAM superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023404	Homologous_superfamily	Radical SAM, alpha/beta horseshoe	Interproscan
IPR013848	Domain	Methylthiotransferase, N-terminal	Interproscan
IPR020612	Conserved_site	Methylthiotransferase, conserved site	Interproscan
IPR005839	Family	Methylthiotransferase	Interproscan
IPR038135	Homologous_superfamily	Methylthiotransferase, N-terminal domain superfamily	Interproscan
IPR007197	Domain	Radical SAM	Interproscan
IPR006638	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR006466	Family	MiaB-like tRNA modifying enzyme, archaea/eukaryota	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11918	RADICAL SAM PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0035596	Molecular Function	methylthiotransferase activity	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0006400	Biological Process	tRNA modification	Interproscan
GO:0016740	Molecular Function	transferase activity	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0035598	Molecular Function	N6-threonylcarbomyladenosine methylthiotransferase activity	Interproscan
GO:0035600	Biological Process	tRNA methylthiolation	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan