Gene detail

Detailed information of Ahemp_007552-T1 in Acropora hemprichii

Genomic Location: scaffold_20:3843110...3854440
NR annotation: XP_015770238.1, PREDICTED: transmembrane protein 145-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ahemp_007552-T1

ATGAAAGGATACTCTCTTGCAATCTTCCTCTTCTTGCTTAACGCCTTTCAAGCACTCGGCTTAGAACATTTTATTTCCGGAAAGATAGATAGCAGAGAGAAATGGGAGCCAATGGTATACTATTCATTCCTGGATGATATAGGCACGCTGAGTTACAAAATGAAGTACACAGTTAAGAATCAATGTTGCCCAGTTCTGGCGTATTACAACGAACAATCGTGGAAAACAGCACACGAGGAGGAAAATGCGTACTGCCGATCCAAGATAATCCTCGCGGATGGTGTAATCCCATTTCAAAATGTATCAGGAAGCAATGACATTAGCAACTTCACCACAGAGTGCTTTGAAGACAATTATTTCAACATTCGGCAATGCCCGGGAACTCTTCGGTTGACTTCGACTGTTAAGACGAGGTGGTCGTTTGTGTTCAGCGATTGTAATAGTACCGAGGGATTATCCATTTACTACGAGCTTAATTTCTCAAGAGGATTCTTCTGGGAAGAGAATGATGAAGGAGAATCGTCGAACTTTCATTCCATTCATCTCATCCCCTTTGTTGCTACTCTAATGGGATTTGCTCTAAGTTTATATGGTGCGTGTCAGCTTCATCAAAAAAAGATGCTTCACCGCGCGTATAAACTCTTCACGGCCTCTCTCGGTAGTGAGTTTGCGGCTTTACTTTTTGACTTAGCTCATGTCATCTCCAAAAAGATCATTTTCTCCATTGCAGCCATCACTGGTGCTCTTCACTCTTTAAGTGAGCTTCTCCTTCAAATTCTTATTGTTCTTATTGCTTTTGGATGGACCATGACTAAGCCTCGTCTAAGGGAAGACCTTCAAATACAACTTCGACTGTTCTTCTTTGTCTATGCTGTGATTTATGGTCTTTGCTTTTTCTGCTCAGCCACAGAATTTTTCCATTTTGATCTTGAACTGGCTAGCTGGCTGAGCGAAAGTATAAAATACATCGGAATTGGCTGGAGGCTTCTGACTTGCCTGATCTTCGTCTATGGCGCTTACACTACAGTCAAAGAAAATCCGCAGAAAAAGAAATTATACTTACCCTTCGTAGTATTCTTTTCTTTATGGTTCATAGCTCCTTCTCCTTCAGCTGGGGCTGATTCAGTCAAAGCAGGTGACCCGTTGTCTCATCAAACCACTTCCACAACTTTCAAATTTGTCGCTGGGGCAGCTATTGCAATTTCTGTGTTAGTCCTCGTCAAGTTGTACTGCGGCGGTGGAGTTTGTAGGAGCAAGGCCCGATTAGATGTCATGGCGTGGACAGTTTCTGCTTTAGTGTGGTTGTTCTACGTTTTCGAGTCCTCATTTGGAATTGAGTCAGGCAAAGCAGGTGACCCGTCGTCTCATCAAACCACTTCCACAGGCGTCAAATTTGTCGTAGGGGTAGCTATTGCAATTTCTGTGGTAGCCCTCCTCAAGTTGTTCTTCGGTGGTGGAGTTTGTAGGAGCAAAGCCCGATTAGATGGCAAAACTGCAATTGTGACAGGTGCAAATACAGGCATTGGCAAAGAGACAGCTCTGGATTTTGCCAAGAGAGGTGCTAAGGTTATCTTGGCTTGTCGTGATGAAGCAAAGGCAAATCAAGCTGCCAAGGATATCATAGCAGAAACTGGAAGCGATAAAGTCCTTGTCAGAGTTGTTGATCTTTCTTCATTTGAATCTGTCAGAGCTTTTGCTAAGCTTGTAAATGAAACAGAGGAGCGGCTGGACATTCTTGTCAACAATGCAGGGCTGTTTGGATCTCATCCCAGCCCCTCAAAAGATGGCTATGAAATGATAATGCAAGTgaattatgtcagccattttctgttgaccttgttgcttatggagaaattgaggaagtcagccccaagtcgcattgtaaatgtgtcttcaatgggaagcaccaggaaagatttaaacctgcagctgaataaagattactttataacactatgttcaagttcatatcagcgctacggtgaatcaaaattagcgcaagtcttgttcacaaaggagctaagccagcgattggaagGCTCAGGGGTGACTGTGTATTCTCTACATCCTGGTGCTGTTAGAACGGAAATTTGGCGTAACTCTCCACTGTTACACAAACCTCTGTTAAAGCAGCTGTTTGGTATGTCAACATGGTTGACATTCAAGGATTGCAAGCAGGGAGCACAGACGACAATCTACTGCTCAGTAGCAAAAGAGTGTGCTTGTGAATCTGGCAATTACTATAGTGACTGCCAAACAAAGGAGCATCCTAACAAACACATCATTGAAGATCCTGGTTTCAGAAAGAAGCTATGGGAAATCAGCGAGACTGTAACTGGTGAAAGCTGGAAAGACTGA

Transcript

Ahemp_007552-T1

Protein

Uniprot

Uniprot term	Description
Q8CEE7	Retinol dehydrogenase 13 OS=Mus musculus OX=10090 GN=Rdh13 PE=1 SV=1
Q8BYK4	Retinol dehydrogenase 12 OS=Mus musculus OX=10090 GN=Rdh12 PE=2 SV=1
Q8NBN7	Retinol dehydrogenase 13 OS=Homo sapiens OX=9606 GN=RDH13 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan
PF10192	GpcrRhopsn4	Rhodopsin-like GPCR transmembrane domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR019336	Domain	GPR180/TMEM145, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43157	PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0019236	Biological Process	response to pheromone	Interproscan