Gene detail

Detailed information of Ahemp_007871-T1 in Acropora hemprichii

Genomic Location: scaffold_21:4114104...4126313
NR annotation: XP_029187956.2, ATP-dependent RNA helicase DDX42-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Ahemp_007871-T1

AGATAATTATACCTCTTCCTGCTGTTGACTACGCAGAGATTGATTATATGGCATTCTCGAAGAACTTTTATATTGAACATGAGGAAATTTCCAAACTTACCTCTCACGAAGTCCAAGAATTGCGGAGGAAGCTGGCTTTGAAGGTGTCAGGAGCTTTGCCTGTGCGGCCTTCAATCAGTTTTGCACATTTTGGATTTGACGAGCAGCTAATGGGAGCAATTAGAAAGTTAGAATACATACAACCAACGCCCATACAGTGCCAGGCAATTCCAGTTGCTCTGAGTGGGCGCGACATCATAGGTATCGCCAAGACGGGTTCTGGCAAAACAGCTGCGTTTCTGTGGCCAGCGTTGGTTCATATAATGGATCAACCTGAGTTAGAACCGGGGGATGGCCCCATTGCATTGATCTGTGCCCCCACCAGAGAACTCTGTCAGCAGATCTTCGTGGAAGCGCGACGGTTTGGAAAAGTTTACAACATTAACGTAGTAGCTGTCTTTGGAGGAGGAAACAAGTATGAACAATCTAAGGCTCTTCAAGAGGGTGCCGAAATCGTGGTTGCAACTCCGGGTCGCCTCATAGATCATGTTAAGGCAAAAAGCACAAATCTCCAGAGAGTAACATATCTTGTGTTTGATGAGGCTGATAGAATGTTTGATATGGGTTTTGAACCTCAAGTGAGATCCATCGCCAGCAATGTTCGTCCAGATAGGCAGACCTTGCTGTTTAGTGCGACATTCAAGAAAAAAGTCGAGATGCTCTGTCGTGACATTCTGACGGATCCAATCAGGGTTGTAGTCGGGGAACTTGGAGAAGCGAATGAAGACATCACGCAGATTGTAAAGATTTTACCAACAGGCACGGACAAATGGCCCTGGTTGACAAGTCACTTGGTCTCTTTCACATCGGCTGGCAGTGTGCTTATCTTTGTTACGAAAAAGGCCAACAGCGAGGAGCTGGCTGCGAAGTTGAAGACGAACGATTTTGAAGTTGTTCTTCTTCATGGAGACATGGACCAATTCGAACGAAACAAGGTTATCAACGCTTTCAAGAAGCAAGAAATTCCAATATTAGTCGCTACCGACGTAGCAGCCCGTGGATTGGACATTCCTTCCATCAAGACTGTCATAAATTATGACGTTGCACGTGATATTCACACGCACACTCATCGAATTGGTCGAACTGGCAGAGCGGGGGAAAAAGGCGTGGCCTACACTTTGATAACCCCAACTGATCAGAACTTTGCGGGAGATCTTGTGCGCAATTTGGAAGGGGCCAATCAGGCTGTACCGAGCGCTCTAATGGACATGGCTATGAAGAATGCGTGGTTCCGTAAGTCCAGATTTCAGCACGGTAAAGGGAAAGCGAGTGGCCGAGAAGGAAGACCGCGCATGCGTGAAAGGCCTGGTTTAGGAATGCAGGCATCCTCGAATGCCCACGCAAGCGACGGTGGCGGTTTACAGTTTTCCACTTCAGATTCGTCGTCCGTACCGTCGTCTTCGCTCGGCGGAGTGTTCGGCTCTGCGGCGAGAAACGATCGAAAATCGGCTCTTAAAGCAGCTTTCCAGGCCCAGTACAAATCTCACTTCTGCGCTGCTTCTTCATCCTCTTCAAACAAGTGGGATGCCACGAGCCAGCATAGTACTGCCAAGCCACCCGACCGACCCACCAAGCCCTCGAAACCTCCTGTCAAGAAATCGAGATGGGATCCCGTTTAGTGATACATTCATCCTCCACACAGTGACCCTACCAACCCCTACCTTGAGAATAAGCGATGCTCTCAACTATCTCCTTACCCCGTCTCATCAAAAGCTGAAGAGGTTTCAAATCGACTCTGAGGATTCTCTTTGAAGACATGGCTGTTGTAAATTCGCTTTTACGAATGAAACTCGCATTCAGGTGTGAGACGAATACGCGCGATCCCGAGGCCTACGGTCCATGACATCTTTCAGCCAGTGGAAGAATTGTACTTCGTTTCTATGTTCGAAAGAGAAAAAACAAGGGTTCCGTTTATGAGACAGCCATCCGCCCGCTCCATGCAACGTTTCTACGACGTTCCTTTCAAAGAATATTCTTTGACGAAATGGAATTATTAATGTTTTTCTGAGAAATAATACAGTAGCGTTCAAGTCTAAAGTGGAAAACGCACAGGAGAGTGTAGCGTTGCGGCTTACTGAGATCAAACATGGAAGTCGCAGGTTATTCTTCCAAATCCGACTCGAAATTCGTGGGCTGTTTGATGGGGCTTGTAAAGCGAACCGGAAGGTTCAACCAATCACAGAGCCTGAGAATTACGGTGGCCCACAACTGTCACATCAAAACCAAATACTCACAGCACATTCAAGTCACTTACAGCAAATTTAAGCCATTCACAACAAATTCAAATCACTCACAGTAAATTACAAATGACTCACAGCAAATCAAGCTAAAATCACTCACAGCAAGTTCAAATTTGATGTGACAGTTTTGGGTCACCTTAGAGAGTGAATGGTTTATTAAAACTCGAACTTTCCACAGATACGAAGTCGTTAGCGGAATCGAAAGAAAATGCAAAGGCAAATTGCATAAATGTTCTTCAGTACACAGGCATAATGGGGTTCATGCTTTTTTTATGTAGACGTCATATAATGTCCTCCGGACTCTTAGCATTACGAAGTTCTTTTGCTCAAGGAGACATTATGTTACAACTTGTCATGCAGGTAGCCTGAATCTCATTAAAGCCGCTGTAATTTCATGTCTTTTTAAAACTTGTCTTTTGTATCCATTCTGTAATCATTCTGCCGGAGCATATAATTAAAACCAACGTGAATAACGCCTTGTGTTTTCACAATGTGTCTTCCAATGGGTTATCTTCTATTGTTTT

Protein

Uniprot

Uniprot term	Description
Q5F485	ATP-dependent RNA helicase DDX42 OS=Gallus gallus OX=9031 GN=DDX42 PE=2 SV=1
Q810A7	ATP-dependent RNA helicase DDX42 OS=Mus musculus OX=10090 GN=Ddx42 PE=1 SV=3
Q86XP3	ATP-dependent RNA helicase DDX42 OS=Homo sapiens OX=9606 GN=DDX42 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12835	DDX42, SF3B125; ATP-dependent RNA helicase DDX42	EC:5.6.2.7	Spliceosome	ko03041	deepkoala