Detailed information of Ahemp_007948-T1 in Acropora hemprichii

Genomic Location: scaffold_22:746886...756419
NR annotation: XP_015777911.1, PREDICTED: TNF receptor-associated factor 6-like isoform X7 [Acropora digitifera]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
B5DF45TNF receptor-associated factor 6 OS=Rattus norvegicus OX=10116 GN=Traf6 PE=2 SV=1
P70196TNF receptor-associated factor 6 OS=Mus musculus OX=10090 GN=Traf6 PE=1 SV=2
B6CJY5TNF receptor-associated factor 6 OS=Macaca mulatta OX=9544 GN=TRAF6 PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING
Ubiquitin FamilyE3|E3 activity RING|U-box

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13923zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF02176zf-TRAFTRAF-type zinc fingerFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001293DomainZinc finger, TRAF-typeInterproscan
IPR027139DomainTNF receptor-associated factor 6, C3HC3D-type RING zinc fingerInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10131TNF RECEPTOR ASSOCIATED FACTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0031663Biological Processlipopolysaccharide-mediated signaling pathwayInterproscan
GO:0032813Molecular Functiontumor necrosis factor receptor superfamily bindingInterproscan
GO:0033209Biological Processtumor necrosis factor-mediated signaling pathwayInterproscan
GO:0045087Biological Processinnate immune responseInterproscan
GO:0051092Biological Processpositive regulation of NF-kappaB transcription factor activityInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0070534Biological Processprotein K63-linked ubiquitinationInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005164Molecular Functiontumor necrosis factor receptor bindingInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan

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