Gene detail

Detailed information of Ahemp_009345-T1 in Acropora hemprichii

Genomic Location: scaffold_27:1247820...1259775
NR annotation: XP_029201266.2, RING finger protein nhl-1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ahemp_009345-T1

ATGTCAAGTGGAGATACAGCTATGGCCTTTAAGACATGGGAGATGTCCAATAATATCGAAACACTCAGCAGTGTTGACGAAATCTTTAAATTCGACAGACAACAACAACAAGAAATTCTCCATGCGAAACCATGGCAAAAAGACCCTCATTATTTCAAGTATATCAAAATTTCTGCCTTGGCCCTCCTTAAAATGGTTATGCATGCCAGGTCAGGTGGTAACCTTGAGGTGATGGGTCTTATGCTGGGCAAAGTTGATGGCGACACTATGATTGTAATGGATGCATTTGCTTTGCCTGTGGAGGGAACTGAGACAAGAGTCAATGCCCAGGCTGCGGCATATGAGTACATGGCAGCGTACACTGAATCTGCTAAACTGGTTGGTCGTCTGGAGAATGCAATTGGATGGTATCATAGTCACCCTGGATATGGTTGTTGGTTATCAGGAATTGATGTGGGAACCCAGATGGTAAACCAGCAATTTCAAGAACCCTTTGTGGCCATTGTGATTGACCCTACAAGGACTATTTCAGCTGGGAAAGTTAATTTAGGAGCATTCAGGACCTATCCAAAGGGCTACAAGCCACCTGACGAGGGTCCATCAGAATACCAAACTATTCCTCTAAACAAGATTGAAGATTTTGGAGTACACTGCAAACAGTATTATTCTTTGGAAGTTTCATACTTCAAGTCATCACTAGACAGAAAACTTCTTGAGATGTTATGGAATAAGTACTGGGTGAACACATTATCTTCATCAAGTCTTCTCACAAATGCAGACTATACTAACCACCAGATTGCAGATCTCTCAGAAAAACTAGAACAAGCTGAATCACAAGTTGGTCGAATGGGTAGCTTTATGATGGGGGTTGATCAAGACAAGAAAGAGGAAGGAAAACTCACTAAGACCACACGAGATAGACGCCACCGTTCGGTTCTGTGTGGAATCATGGATATCAAAACCTTTCTTGGCAAGCTTCGAGAACACGTGGCCTGCTCCGTGTGTATGAACATTTTTACCGTTCCAAAGCAGCTCCCTTGCTTGCATAGTTTTTGTCTCCACTGCCTGAACGAAATTGCAGGAGCAAGTGCGAGAAAAGACATCATAACGTGCCCAGAGTGCAGACGAGAAGTGACAGTTCCTGCCAGTGGAAACTTCAACGAACTTCCTACTGACTTCAACCTCAACAGCTTAATCGATACTTTGGCCGTTGAAGACTGCAATGCAATCAGTGTCAAGTGTGGAAATTGTGAAAAGAGAAACGCGAAGTGTGTTTACTGTTTTAACTGCAGTGCGTTCTTGTGTGAGGAATGCAGATGGGGCCATGACATCATGCGAGCTAACAGATGTCATCGAGTGGTAGCGATTCAAGACTTTAAAGACCAAGATGTCATTGCTGTGCTACAAAGACCCGCGTTCTGCCTCAAAAAGAACCACGAGAGCGAACAGCTGAAGTTTTTCTGCCAGGACTGCAAAACTGCGATTTGCAGCCTTTGCGCTTTAACCCATCAGGAAGGACATGCAAAGGTTCTTTTGGAAGATGCGTTCAGTGAACGCCAAATTAAGATTAAAGAGGCCATTATATCTCAGAAACAGTATGTAACGGAGACGACGCGTAAAATCAACGAAATTAGCCAAAATTGTGTTAAGATTCACCAGGAAGTATTAAATGCAAAACAAAGGATGGAGGACTTTGTTACTATCATAAAAGAAGTCGCTGAGGCGAAAAGACAGGAAGTGTTAAAGAAAGTGGATCAACAGGCCAAAGAAGCGCTGGATCGTTTGGAAAACCAAAAGTGCGAGTTGGAAGGTGAAGTTAGAGTGATAAAAAAGGCCATCGAAAGAAGCGAAACGTTGCTTAAGCGTTGCACGAATGTCGAGATTGTTCAGTTAGGCGCTGTTCCCTGTGAAGAAGTACGTGTTGGTGTACAGCAACTCAACGGTGACCCTGACCTGGTTTGGCACGTAGTTTTCAAAGAGAACCCGAGATTGCTGAAGGACGTCAAGAGCGGCGGCATTGGCTCCATCCACAGCTTTTTCAGCAAGACGAATGCGCGGGAATCCACGGCACAGGGAAGCGGAACCGTTGAAGCAACTGTGGGCCTCGAGGCTGTGATTATGGTCAGCACGAGAAATTCCAACGAGGTAATGCCAAGACAAGGGTCTGATGTCGTAGCACTGGAATTCGGAAAACACGATTGTCAAGTTACCGAACCTGAGATCACAGGCAACAAAGATGGTACCTACAAGATCAGCTACTTTGCCAAGGAGACCGGAACATGTCAGGCATCTGTGAAGGTGAATGGAGAACATGTCTGTGGTAGTCCTTTCGAAGTGAAATTCCAGCCCAGAGAATTCAGACACTCGTCGTCCTTTGGAAAATTTGGTCATCGCTTTGGAGAACTGAACCATCCTTGGGGTTTAGCAGTAAACGCACGAAACGAGATTGCAGTGTGTGATACTCGAAACAATAGAGTTCAGGTATTCAATACTAATGGTCACTGGCTCAGGGCTCTTGGCACGAAAGGCGATGGCCAAGGAAACCTCAATTTTCCAAATGGAATAGCTTGGGATTCAGATGGGACTATTTTTGTGGTAGACTGCAACAACCACAGAGTTAACAAGTTTAATAGCTCTGGACAATATCTCGGCCAAATTGGCAACAAAGGCCGCCTCCATCATCAACTTTGGAACCCGCGCGGCATATCAGTTGATTCCAAAGGAAACCTTATTGTCACCGATACAGGCAACCAGAGAATTAAGATCTTTTCCTCTCGCGGCCAGATCTTGGGCGGCTTTTGCGGCGGAGGCGTTCTTAAGAAACCTTACGACGCTGTTGAGAAGCATGGAAAACTGTTTGTGTCCGACACTGCTGACCATTCTGTCAAAGTATTGGACATGAAAGGGGCGTTTCTTTTCAAATTTGGAAAACTGGGAGAAAGTGATGGCGAATTCAACCAACCTCGTGGATTGTCTTTCGACAAGGCCGGCCATCTTGTTGTCTGTGATTCGGAGAACAATAGAGTCCAGCTCTTCGACTTGACCGGAAAGTTTGTCACAAAGTTTGGAACAAAAGGAAAGAACTTTGAAGGACTGAACAAACCAATCAACGCGGTTGTCCTCAGCGACGGTAGAATAGCTGTTTCTGACTTTTACAACCATCAAATCCACCTTTTTCAGTAG

Transcript

Ahemp_009345-T1

Protein

Uniprot

Gene family

Uniprot term	Description
Q6PC30	COP9 signalosome complex subunit 5 OS=Danio rerio OX=7955 GN=cops5 PE=2 SV=1
Q92905	COP9 signalosome complex subunit 5 OS=Homo sapiens OX=9606 GN=COPS5 PE=1 SV=4
O35864	COP9 signalosome complex subunit 5 OS=Mus musculus OX=10090 GN=Cops5 PE=1 SV=3

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Jab_MPN
Ubiquitin Family	DUB\|JAMM\|JAMM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01398	JAB	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	Family	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF18323	CSN5_C	Cop9 signalosome subunit 5 C-terminal domain	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR000555	Domain	JAB1/MPN/MOV34 metalloenzyme domain	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR037518	Domain	MPN domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR050242	Family	JAMM/MPN+ metalloenzymes, peptidase M67A	Interproscan
IPR040961	Domain	Cop9 signalosome subunit 5 C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10410	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008233	Molecular Function	peptidase activity	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0000338	Biological Process	protein deneddylation	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008180	Cellular Component	COP9 signalosome	Interproscan
GO:0019784	Molecular Function	deNEDDylase activity	Interproscan