Genomic Location: scaffold_33:1549630...1554405
NR annotation: XP_022779494.1, E3 ubiquitin-protein ligase TRAF7-like [Stylophora pistillata]
| CDS | ||||
| Ahemp_010385-T1 | ||||
| Transcript |
| Ahemp_010385-T1 |
| Protein |
| Ahemp_010385-T1 |
| Uniprot term | Description | |||
|---|---|---|---|---|
| Q6NVM0 | Histone H1.0 OS=Xenopus tropicalis OX=8364 GN=h1-0 PE=2 SV=1 | |||
| P22844 | Histone H1.0-B OS=Xenopus laevis OX=8355 GN=h1-0-b PE=1 SV=1 | |||
| P15870 | Histone H1-delta OS=Strongylocentrotus purpuratus OX=7668 PE=3 SV=1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | UBD|Other|Beta-prp |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|CDC20 |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|DWD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00400 | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| PF00538 | Linker_histone | linker histone H1 and H5 family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036322 | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR005819 | Family | Linker histone H1/H5 | Interproscan |
| IPR005818 | Domain | Linker histone H1/H5, domain H15 | Interproscan |
| IPR001680 | Repeat | WD40 repeat | Interproscan |
| IPR036388 | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR036390 | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| IPR019775 | Conserved_site | WD40 repeat, conserved site | Interproscan |
| IPR015943 | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11467 | HISTONE H1 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0000786 | Cellular Component | nucleosome | Interproscan |
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0006334 | Biological Process | nucleosome assembly | Interproscan |
| GO:0030527 | Molecular Function | structural constituent of chromatin | Interproscan |
| GO:0003690 | Molecular Function | double-stranded DNA binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0030261 | Biological Process | chromosome condensation | Interproscan |
| GO:0031492 | Molecular Function | nucleosomal DNA binding | Interproscan |
| GO:0045910 | Biological Process | negative regulation of DNA recombination | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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