Gene detail

Detailed information of Ahemp_010763-T1 in Acropora hemprichii

Genomic Location: scaffold_36:449859...460594
NR annotation: XP_044163020.1, serine palmitoyltransferase 2-like isoform X3 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Ahemp_010763-T1

AGTGAAACGAGTTGGTCCTCCCACCGAGAAGGATTTCGTCTCAAATGTCCGTCACATGCAATGGACAATACCGCAGACAGATAATGAAGCCTCAATGGTCATTCAGGGTTTTGTGCCGCTCTACTCAGACTTTGAGAGCTTTTACACAAGAAATATGTACACGCGCGTACGCGATTGCTTCAACAGACCGATTTGCAGTGTACCAGGAGCAGAGATCGAGCTGTTGGACAGAAAATCACATGACTACAACTGGACATTTAGATACCCTGGCACTACAACCAAAGCATTGAATCTTGCTTCTTATAATTATCTTGGTTTCGCTGAGAATTCTGGGCCATGTGCAGAGGCCGCTGAACAGGCAGTGCGGAGATATGGTTTGGCGGCCTGTAGCGCAAGGAATGAATACGGCACTCTTACGATCCACCAAGAACTCGAAGCCCTGGTTGCGCGGTTTGTCGGGAAACCTGCTGCTGTGGTGTTTGGAATGGGATTCGCCACAAACGCTGGCAACATCCCCACCCTGGTGGGCAAGGGATCTTTGATTATCAGTGATGAACTCAACCATACATCCCTCATTTTAGGAGCGAGACTCTCTGGTGCCAAGATTAAAGTGTTTAAACATAACGATATGAAGAGCTTGGAGAAAATCCTAAGGGAATCTATTACTCAGGGTCAACCGCGAACTCACAGAGCATGGAAGAAGATTCTCATTCTAGTTGAAGGAGTTTATAGTATGGAAGGCTCAATTGTAAGGCTCCCTGAAGTGGTGGCTCTCAAAAAGAAATACAAGGCGTACCTTTTCTTGGACGAGGCCCACAGTATTGGTGCATTGGGTCCTAATGGAAGGGGTGTGACAGATTTCTTTGGGGTGGACCCTGCTGATGTTGACATCATGATGGGAACTTTTACCAAGAGTTTTGGAGCAGCGGGAGGTTACATTGCCGCATCTGAGAAGATAATAAACCATATCAAAGGTCGTTCCCACAGTGCAACTTACGCGTCGTTTATGTCACCTCCAGTAGTTATGCAAATTATATCGTCGATGAAAATAATCATGGGAGAGGACGGCACCGATAAAGGAAAGAAGAGGATAACAGCATTAGCACAAAACTGCAAGTATTTCAGGACAAGAGTGAAACAACAAGGATATATTGTGTATGGCCATGAGGCCTCTCCAGTGGTACCTATTCTACTTTACTTGCCATCAAAAACTGTCGCCTTCTCTCGAGAAGTGTTGGAAAGAAACATTGCTGTGGTGATCGTTGGATTTCCCGCTGTCCCCCTGGTAGAAGCTAGGGCTAGGATCTGTCTTTCGGCTTCACACACCAGAGAAATGCTTGATAAGGCTATAGAGGCCATAGATGAAGTTGGAGATATTCTCAGACTTAGATATTCAAGGAGAAAACTGGCGATGGCAGAATGAGAACGAGCAAGTCAAATGTAAAAAAAAAGAGTGTTTCGGTTATTTCTCGCGGAGAGGTAGAGCTGATGTGTGAAGGGTGTTTTTCACTGACGACAGAGTCAGATTCGGAATAGTAAGCAGAAGCGCAAAGCCATATGATAAAATGAAATTAAACCAATGGAATCGGAAGCAGATTACTGGATGCAACTTGCGACTCGTCAGTTAGAGTCGGAAGCACTCGGAGGGCTAAGAATTGTGATTGGTGACCTCTTGCGTTTCTGCTTGCGAATCCGACAATGAACTTTTCACTACATCATAGTCGAGGGAATCATAAACGGAATTTGAAGAAAATGGAACCGCTCTGATTCTTTTGATTGTGATTGCGTCGATCCTCATGACTACACTTGCCAGTAATTTTCGATTTTCTTAATTCAATGATTGTCTTAAGCGGTCGTACGACTCTGACTCCGTTGCTAGTCAAGCAAAACGCTTCAGTTAACAGTGAATATTCGTTACATTTTTTGCCGGTTTCAAAAGTGCAACACACAGTGAGTTGTTTGTAAGGCGCGGCAGAGATATTTTTCATTTTTTAATT

Protein

Uniprot

Uniprot term	Description
P97363	Serine palmitoyltransferase 2 OS=Mus musculus OX=10090 GN=Sptlc2 PE=1 SV=2
O54694	Serine palmitoyltransferase 2 OS=Cricetulus griseus OX=10029 GN=SPTLC2 PE=2 SV=1
Q3B7D2	Serine palmitoyltransferase 2 OS=Rattus norvegicus OX=10116 GN=Sptlc2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR004839	Domain	Aminotransferase, class I/classII	Interproscan
IPR050087	Family	8-amino-7-oxononanoate synthase class-II	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR001917	Binding_site	Aminotransferase, class-II, pyridoxal-phosphate binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13693	CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0004758	Molecular Function	serine C-palmitoyltransferase activity	Interproscan
GO:0017059	Cellular Component	serine palmitoyltransferase complex	Interproscan
GO:0046512	Biological Process	sphingosine biosynthetic process	Interproscan
GO:0046513	Biological Process	ceramide biosynthetic process	Interproscan
GO:0016740	Molecular Function	transferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00654	SPT; serine palmitoyltransferase	EC:2.3.1.50	Amino acid related enzymes	ko01007	deepkoala