Gene detail

Detailed information of Ahemp_010774-T1 in Acropora hemprichii

Genomic Location: scaffold_36:543494...559149
NR annotation: XP_029189597.2, N-terminal kinase-like protein isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ahemp_010774-T1

ATGCAAGGATTATGGAGTTTGATTGGAAAGATCGGAACTGGTGCTGCACAAAATTTTCCTTACGAGATCGGCGATAAAATTGGAAGTCTGGATGAGAAGTCTGTATGGACATTACATGTTGGAAAAAAGAAAGGTAATGGAGAAAGTGTGTCGATATTTGTTCATGACGTAAAAACGTCGTCTGAAGACAAGattcaaactgccaaacttgctctgagaagactgaaaactcttcgtcatcctaacatactacgctacattgatggtcttgagtcagagatggtaatttatctggtaacagagccggtgagaccattagatgtgcagcttaatgatggagaaagttctgatgtggccatctcttggggtctacatcaaatcacagttggccttagtttccttacaaatgattgtaacttgattcatggcaatgtgtgcatggcctcagtatttgtggatgttgccggggaatggaaacttggtggaatggagtatctcaaaccagtggaaccaccttcctccacctcagcagaacctgatctaccacggctgccagttttgcaggtgtatgagcctcctgaaggaagaaagtttgataaaaccaacagaaagattgaaaaatggtcagctgacatgtggggccttggttgtctgatctgggaagtgttcaatggtccattacaaaagacaggctctctcaaatctgttggcaagataccaaagaatctgataactgactatgttcaacttgttggcgctaaccctaaaagccgacccaaccctgcaaagttccttcaagattgcagaactgatggccattatctcaaaaacagttttgttgatgctaatttatttttacaggagttacagattaaggagcagaaagaacaaaagcgatttttcacatctctcagttcatcgttagactcttttccacaacaatattgtaagcatagaattctgccgcaattgctgaatgcctttgaatatggatcagcaggctctgctgtgctggggccactctttaaggctggcatcagaacaaacactacagtctgtctaggaaaaattgcagtcaacctcccacctacaacccgtcaaaaagtattgatccctgcctttttgcgtgctctaagagacccctttcctcctgcacgaattgctggtatcatgggtttcatggcttctgctgagttcttcagtgcaaaggaatattccatgaagatcttgcctgccctgtgtaccctcactgtggatcctgaacgtaaagttagagatcaggttttcaaagtaattaaactccttcttgggaagcttgaaaaagcctcagaagatcctgaatcgtctattaaccaagatgTATCAGTCGAACAAGCAGCTGAAACAGAAAATCCAGGCTCTTCTTGGACAGGGTGGGCTGTTAGCTCACTAACATCCAAACTGTACCGTGGAGGACACACACCCTCTGGGCCAGCTGAACCTGAGAAGAATAAAACCTCAGGCAAACAAGAAAATGCAGGCAAAACAAAAGAAGGTGTTAAAGAATTATCAAAAGTCACTGATGATTCAAAGGCCAAAGGAAACAGGAAGAAAGAAGTCAATGAAGATTCAGGCAGTGATTATGGAGATAACTGGAGTGGTGATGAATGGAATGATGCTCAGGAACCAAACCTTGATGATCTGAGAAGTGACCTCCTTGCAGCCAAAGAGGAAATTTCAGCGTTTCAAAGTCCAAAGGATGAATTGCCTGTAAGACATTCTGCATCCCTTGCTGCTGATATTGATGACAAGGAAAGTGGTAGTGGTAGTGACTATGGTGACTGGGAGAATGATGATTGGTCAATGGATGGTTTTGCTTTTACAAGTACAACAAAGAAGGAGTCTAAGAGCAAACTCACACAGAGTACCAAGCCTGGAAGTGATAAGCAACAAAAGACCAGTTCTCAAGCTGAAAAAGTGTCAAAGATCCATGAAGTCAGCAGTGAGCAAACTGCAATGGACAGCGGTTGGGAGGAGGATTATTTTGAGCCAAAGGGTAAAAGTAAAACGTCAGCAACTCAAAACCTTTTACCAAAGACCAAAGGAAAAGCAGTCCCTTCACAAACAACGGGAGGAGATGCATGGGAAACAGGGGACTGGGGGTCATTTGATGAATCACCACTGACCCGTAGTGATCATGTAGTGGAGTCACAAACAAAAAATACTTCAACTGATGGGTGGAATGATGATGATTGGGGCACAGAAAACTGGCAGGAAGACAAACAGAGCAAAGCAGAACTTAATAAAAAGAAAAGAGAAGAAAGAAGACAAAAGCTACAGGCTCAAAGAGATAAAAGGGCTGCAGGAGGAAAGGGCCCATTGAAACTTGGTGCTGTGAAAATGCAGTGA

Transcript

Ahemp_010774-T1

TTTGAAATGGGGTGAAAGTAGTGAATTGGAATCCAGTATATTTTTCCGGCTTTGTTCACTCTTTTGTCTCATAACATGCAAGGATTATGGAGTTTGATTGGAAAGATCGGAACTGGTGCTGCACAAAATTTTCCTTACGAGATCGGCGATAAAATTGGAAGTCTGGATGAGAAGTCTGTATGGACATTACATGTTGGAAAAAAGAAAGGTAATGGAGAAAGTGTGTCGATATTTGTTCATGACGTAAAAACGTCGTCTGAAGACAAGattcaaactgccaaacttgctctgagaagactgaaaactcttcgtcatcctaacatactacgctacattgatggtcttgagtcagagatggtaatttatctggtaacagagccggtgagaccattagatgtgcagcttaatgatggagaaagttctgatgtggccatctcttggggtctacatcaaatcacagttggccttagtttccttacaaatgattgtaacttgattcatggcaatgtgtgcatggcctcagtatttgtggatgttgccggggaatggaaacttggtggaatggagtatctcaaaccagtggaaccaccttcctccacctcagcagaacctgatctaccacggctgccagttttgcaggtgtatgagcctcctgaaggaagaaagtttgataaaaccaacagaaagattgaaaaatggtcagctgacatgtggggccttggttgtctgatctgggaagtgttcaatggtccattacaaaagacaggctctctcaaatctgttggcaagataccaaagaatctgataactgactatgttcaacttgttggcgctaaccctaaaagccgacccaaccctgcaaagttccttcaagattgcagaactgatggccattatctcaaaaacagttttgttgatgctaatttatttttacaggagttacagattaaggagcagaaagaacaaaagcgatttttcacatctctcagttcatcgttagactcttttccacaacaatattgtaagcatagaattctgccgcaattgctgaatgcctttgaatatggatcagcaggctctgctgtgctggggccactctttaaggctggcatcagaacaaacactacagtctgtctaggaaaaattgcagtcaacctcccacctacaacccgtcaaaaagtattgatccctgcctttttgcgtgctctaagagacccctttcctcctgcacgaattgctggtatcatgggtttcatggcttctgctgagttcttcagtgcaaaggaatattccatgaagatcttgcctgccctgtgtaccctcactgtggatcctgaacgtaaagttagagatcaggttttcaaagtaattaaactccttcttgggaagcttgaaaaagcctcagaagatcctgaatcgtctattaaccaagatgTATCAGTCGAACAAGCAGCTGAAACAGAAAATCCAGGCTCTTCTTGGACAGGGTGGGCTGTTAGCTCACTAACATCCAAACTGTACCGTGGAGGACACACACCCTCTGGGCCAGCTGAACCTGAGAAGAATAAAACCTCAGGCAAACAAGAAAATGCAGGCAAAACAAAAGAAGGTGTTAAAGAATTATCAAAAGTCACTGATGATTCAAAGGCCAAAGGAAACAGGAAGAAAGAAGTCAATGAAGATTCAGGCAGTGATTATGGAGATAACTGGAGTGGTGATGAATGGAATGATGCTCAGGAACCAAACCTTGATGATCTGAGAAGTGACCTCCTTGCAGCCAAAGAGGAAATTTCAGCGTTTCAAAGTCCAAAGGATGAATTGCCTGTAAGACATTCTGCATCCCTTGCTGCTGATATTGATGACAAGGAAAGTGGTAGTGGTAGTGACTATGGTGACTGGGAGAATGATGATTGGTCAATGGATGGTTTTGCTTTTACAAGTACAACAAAGAAGGAGTCTAAGAGCAAACTCACACAGAGTACCAAGCCTGGAAGTGATAAGCAACAAAAGACCAGTTCTCAAGCTGAAAAAGTGTCAAAGATCCATGAAGTCAGCAGTGAGCAAACTGCAATGGACAGCGGTTGGGAGGAGGATTATTTTGAGCCAAAGGGTAAAAGTAAAACGTCAGCAACTCAAAACCTTTTACCAAAGACCAAAGGAAAAGCAGTCCCTTCACAAACAACGGGAGGAGATGCATGGGAAACAGGGGACTGGGGGTCATTTGATGAATCACCACTGACCCGTAGTGATCATGTAGTGGAGTCACAAACAAAAAATACTTCAACTGATGGGTGGAATGATGATGATTGGGGCACAGAAAACTGGCAGGAAGACAAACAGAGCAAAGCAGAACTTAATAAAAAGAAAAGAGAAGAAAGAAGACAAAAGCTACAGGCTCAAAGAGATAAAAGGGCTGCAGGAGGAAAGGGCCCATTGAAACTTGGTGCTGTGAAAATGCAGTGA

Protein

Uniprot

Uniprot term	Description
Q28FH2	N-terminal kinase-like protein OS=Xenopus tropicalis OX=8364 GN=scyl1 PE=2 SV=1
Q561M0	N-terminal kinase-like protein OS=Xenopus laevis OX=8355 GN=scyl1 PE=2 SV=1
Q9EQC5	N-terminal kinase-like protein OS=Mus musculus OX=10090 GN=Scyl1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR051177	Family	Catalytically Inactive Kinase-Related Protein	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12984	SCY1-RELATED S/T PROTEIN KINASE-LIKE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08876	SCYL1; SCY1-like protein 1	-	Transfer RNA biogenesis	ko03016	deepkoala