Detailed information of Ahemp_010850-T1 in Acropora hemprichii

Genomic Location: scaffold_36:1475397...1489126
NR annotation: XP_044163477.1, endoribonuclease Dicer-like isoform X1 [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q25BN1Endoribonuclease Dicer OS=Gallus gallus OX=9031 GN=DICER1 PE=2 SV=3
Q8R418Endoribonuclease Dicer OS=Mus musculus OX=10090 GN=Dicer1 PE=1 SV=3
A0MQH0Endoribonuclease Dicer OS=Cricetulus griseus OX=10029 GN=DICER1 PE=2 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20931Dicer_platformDicer, platform domainDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF02170PAZPAZ domainDomainInterproscan
PF03368Dicer_dimerDicer dimerisation domainDomainInterproscan
PF00636Ribonuclease_3Ribonuclease III domainFamilyInterproscan
PF20932Dicer_dsRBDDicer, dsRNA-binding domainDomainInterproscan
PF04851ResIIIType III restriction enzyme, res subunitFamilyInterproscan
PF20930Dicer_PBDDicer, partner-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR038248Homologous_superfamilyDicer dimerisation domain superfamilyInterproscan
IPR036389Homologous_superfamilyRibonuclease III, endonuclease domain superfamilyInterproscan
IPR048512DomainDicer, platform domainInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR000999DomainRibonuclease III domainInterproscan
IPR003100DomainPAZ domainInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR005034DomainDicer dimerisation domainInterproscan
IPR044441DomainDicer, double-stranded RNA-binding domainInterproscan
IPR006935DomainHelicase/UvrB, N-terminalInterproscan
IPR048513DomainDicer, partner-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14950DICER-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004525Molecular Functionribonuclease III activityInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004530Molecular Functiondeoxyribonuclease I activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006309Biological Processapoptotic DNA fragmentationInterproscan
GO:0016442Cellular ComponentRISC complexInterproscan
GO:0030422Biological ProcesssiRNA processingInterproscan
GO:0031054Biological Processpre-miRNA processingInterproscan
GO:0090501Biological Processobsolete RNA phosphodiester bond hydrolysisInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0016891Molecular FunctionRNA endonuclease activity, producing 5'-phosphomonoestersInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0016787Molecular Functionhydrolase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11592DICER1, DCR1; endoribonuclease DicerEC:3.1.26.-
Chromosome and associated proteinsko03036deepkoala

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