Gene detail

Detailed information of Ahemp_010899-T1 in Acropora hemprichii

Genomic Location: scaffold_36:1932109...1946972
NR annotation: XP_015758868.1, PREDICTED: spastin-like [Acropora digitifera]
Species abbreviation AHEMP · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Ahemp_010899-T1

TAAAAAGCTTAAAAATACATTTAGCAATGTATGGCGTTCTTTTTCAAATTGAAGCTTAATTATTTCTCAAAAATGCATGGTTACCCCCTATTTTCTTTTTGGATACCAAGAGTACTTACTAAGACCTACTTTCTCCGGATAGTTTTAAGCCGCACAAAAATATCCCTGTATTAGTAAGCATTAGTGATAGAAAATCCGACTATCTCGAGATGCGCAGAACGTATGCGCAATAACAATAGTAGGCACCGTCCTTAATAAGGAATTTATACCAGTATGAAAAACTGAATTTGACCTTGTACTGTGACTAAAGCAACAACTTAACTTTGTGCCCATTATTGTCTTTCAAGAAAGCTATTCTTTGAAAATACTATCCATTTGCAATATTTATCACTTTCCATAGACCCTTTTCATAAATGGCTGCCAATTTAAAATCCTTTTGTATGCATTTAAATTAGCCTCACTAACCTCGTTTGGGAGTAAAAATTCTTTTGAATTGTCAACTCAAAAACGAGGTTAGTCAGGCTAATTTTAATAATAACAAAAGAATTTATAATTGGCAGCCATTTATGAAAAGGGTCTATTACTGTGAGCAAAAAGGTAAGTTCTGCAATTATTTCTTAGAATTGTGATTAAAATAAGATTTTGCAAGTTCTGTGAAGTATGTAACTATAACCAAATTTTAAAGGAAACTGTGCCAAACAGCGATTTCGAATGGTCCCTTGCTTATCTGAATCATTCTTGTAAGGAACGACCCTGGAATTATACGAATGAATCAACAATTTTAAAAGTGTGTTTATAATGTTGTCAAAATATAGTGTATCATATATGACGTATGTAATAGAAACAGTGAGTGAGATCGCTGACCAAAATTTGACTTCGTTAAGCCCGTTAAGTGAAGTGATGTCTTCCTCGTCTTTCACTTTCTCTTCCACTTCGTGATTTAAATGCATCTATATGGCTCACTTCTCTCTCTCGTAATTTATCCCGTTGTTTCAGTATGGAATGCAATATGCTTTTTGTTTGTGACTTTGCTCTGGTCAAACTTTTTTGGGACTAAAAAGAAGGCAGCTATCCCTGTGGGCGCTCCAAGTTGTCCTCGACAATCGCGTTTCACCATGGCATCGCGATCGCCACCAAAACCTATCAGACCTCAGACCTCTGTGGATGAAACAGAGGATGGCTTACCCGAAGAGATAGGTAGACTGCGAGCGCATCATAAACAAGCTTATGATTACATCTTGAAGGCTTTGGAAATCGACGAAGGAGGAGGAGGTTTGGCAAGTAAAAAAAGAGCAGTGGACTTTTATAAAAAAGGCATGAAGGAATTAGAAATTGGTCTACAGATCAGCTGTGATGAAGAAGGGGAGGAGTGGGAAAAAGGAAGAAAACTTCAGGAGAAAATGAGGTCAAATATGGAAAGTTCTCGAGGAAGATTAGACGAGTTGGTTGCACTTTTGTTGTCCGCATCAAGTATTGATCAAGATGAAGCGAGTAAATTAGTGGAAGAAGTAGCCATGGAAGTAAAAGCTGAGGGCTTTGCTTCTTCTAAAAATCATGATAAACCTTCAACTTCGAAACCTTCTTCTGTTACTACAAGTAAAAAGGGACCAAATTTGAAGGATAATTCAACAAAATCTGCATTTCCAAAAGTCAATGGGAGAACTAGGATACAAAGGTCAAACACAGCGCCAGGAGTTAAACCAAGTGTTTCTAGACAGAGTCCAGCCGCAGGAAGAAGAAACCCTTCAACAACAAAGCAACCAGGAAGAACTGGGATTGGTAATGAAAGAGCAAAGCAAGGAAATGAAAACAAGAAGAAAATTGCGCACTTGAAAAACATTGATATGGACTTGGCAAATCACATCATGGACGAAATTGTGGAAAGTGGGACTCCAGTACACTTTGATGACATAGCTGGTGCAGCTAATGCCAAGAAACTTCTTCAGGAAATTGTGATCCTACCTTATTTGAGGCCAGAGCTTTTCACTGGTTTGAGGGCTCCAGCACGGGGTCTACTTTTGTTTGGTCCTCCAGGAAATGGTAAAACTATGTTGGCGAAAGCTGTAGCAAGAGAATCTAAAGCAACATTCTTCAATATTAGTGCTTCCAGCCTGACATCTAAATGGGTTGGTGAGGGCGAGAAACTTGTGCGTGCATTGTTCGCAGTTGCAAGAGAACTTCAACCGAGTATTATATTTATTGATGAAGTGGACTCTTTGCTTTGCCAGAGAAAAGAAGGAGAACAGGATCACAGCAGAAGAATGAAAACAGAATTTTTAGTTTCTTTTGATGGGGTAATTGCTGATCCCAATGAGAGAATATTAGTAATGGGGGCTACAAACAGACCACAAGAACTTGACGATGCAGCACTCAGGCGGTTTGTTAAGAGGGTGTATGTTCCTCTTCCAGACGTAGAGACCAGAAAGGTCCTTTTGTGCAAGCTTTTAGTCAAGAACCACAATCCACTCGACAGCGATCAAATGGCAACGTTAGCCAGACAAACAGAAGGCTACTCCGGTAGTGACCTTACAGCGCTGGCTCGAGATGCAGCCCTGGGACCAATCAGAGACCTTCGTCCTGATCAAATACAGTCTGTAGATGCGACGAAGGTTCGTGAAATCCAGTTCAGCGACTTCAGAAACTCGTTAAAAGTTGTTCGACCCAGTCTCTCTCCGCAGTCCTTGAGGTTTTACGAGGACTGGAATCGACAATATGGCAGCAGCGCGTGAGGAGGATTGACCTTCAGCTTTCCGGGAACCAGTTAACGTTGGGCTCAAAGGATGTGGCCAATGGGGGCGCTTTTGACCCTACCTTAATTTCACGTCATCCTATTGTTTTATAACTGATATGACAAACCTTGTTTGATAGATTTCGTTCTAGGAAAGTGCGCTTTTTCCACACGTTTCTGTCGTCCTTGAAACGCTGGGACAAAACGAGACATTCTTAATCCAATTCTTTGTAAATGAGTTCATGAAATCAAATTAGCTTGAAAGGTTAGGGTTGTACCAGTCAAATAAAAGCTAGCCTGCGTTAATGGGCTCTGGTCCTAAAGGAGGGAAAGGGCCTTACATTGATACACTTAAATAACCCATACAGTACATAGCTTAGGAAAGAGGTGTGTGCCACTGACCTAAATAATCGAAGGCTCTGGTGGTCAATGAACAGGTCCTTGCTTCTAAAACTTGAAAAACAAAAGGTGAATTGTTTGACATAAGAACCGTATAATTTTGTTAAAAACAAGAACAACAAAGAAATGCAAAGGCTTCCCCCAATACGGAATATATTTACTAGCCGTCAATATTTTGTGGTATTGCCGTCTCAAAATCGCAATTAGTTTATAGAATCGCCAATGTTAAAGAAGTTTACTCTGCTATCCTTTTCGTATTTCTCTTCTCACTCTTGCTTCCATTTGGCCAGAAGATGGTTAGTCAGGTAAAAAGCGATAGAGGACTGTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NW58	Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2
Q9QYY8	Spastin OS=Mus musculus OX=10090 GN=Spast PE=1 SV=3
A7T395	Spastin OS=Nematostella vectensis OX=45351 GN=v1g144095 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000761 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF09336 all species →	Vps4_C	Vps4 C terminal oligomerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050304 all species →	Family	Microtubule-severing AAA ATPase	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR007330 all species →	Domain	MIT domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR015415 all species →	Domain	Spastin/Vps4, C-terminal	Interproscan
IPR017179 all species →	Family	Spastin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23074 all species →	AAA DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015630 all species →	Cellular Component	microtubule cytoskeleton	Interproscan
GO:0140603 all species →	Molecular Function	obsolete ATP hydrolysis activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0008568 all species →	Molecular Function	microtubule severing ATPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13254	SPAST; spastin	EC:5.6.1.1	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.