Detailed information of Ahemp_013800-T1 in Acropora hemprichii

Genomic Location: scaffold_58:1536195...1552693
NR annotation: XP_029183126.2, next to BRCA1 gene 1 protein-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O08623Sequestosome-1 OS=Rattus norvegicus OX=10116 GN=Sqstm1 PE=1 SV=1
Q13501Sequestosome-1 OS=Homo sapiens OX=9606 GN=SQSTM1 PE=1 SV=1
Q5RBA5Sequestosome-1 OS=Pongo abelii OX=9601 GN=SQSTM1 PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyULD|UFD|PB1
Ubiquitin FamilyUBD|Alpha-Helix|UBA

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00564PB1PB1 domainDomainInterproscan
PF00569ZZZinc finger, ZZ typeDomainInterproscan
PF16158N_BRCA1_IGIg-like domain from next to BRCA1 geneDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000270DomainPB1 domainInterproscan
IPR000433DomainZinc finger, ZZ-typeInterproscan
IPR015940DomainUbiquitin-associated domainInterproscan
IPR043145Homologous_superfamilyZinc finger, ZZ-type superfamilyInterproscan
IPR009060Homologous_superfamilyUBA-like superfamilyInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR032350DomainNext to BRCA1, central domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR20930OVARIAN CARCINOMA ANTIGEN CA125-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan

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