Gene detail

Detailed information of Ahemp_015608-T1 in Acropora hemprichii

Genomic Location: scaffold_79:731278...771879
NR annotation: XP_029190770.2, uncharacterized protein LOC114957474 isoform X1 [Acropora millepora]
Species Acropora hemprichii · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ahemp_015608-T1

ATGACAGGGCGAGCCAGGGGAAGAAGCAGGGGTCGTGGGCGAGGTGGAGGTGGCGGCGATGCGGCTCGAAGACCTGGAGAGGGTCCTCAAGAAGCTCAGCGTGAACAAGCTGCTCCTGTAGGACGAGGTAGATCAAGGGGACCCCCACCAGCACAAGTCCCTGCCCCAGCTCCTCAAAGGCCACCACCAGCACAAGCAGAACCCCCCACCCAGGCCATGGCAAAGATGGCTGTATCCCAGGAACAGAGACCCCCAAGGAGATCCAGGGACATTGTTGATGATGTTGCCACCAAGCCACAGCACATTGTTGACAAGAAAGGGAGCACTGGCGGCAAAATAACCTTGCTTACAAATCACTTCAAGTTGAGGACCAAACCTGAATTTGGAGTTTACCAGTATAATGTGAGCTTTAATCCTGAACAGGAGTCAAAGAGAGTAAGAGTTGCTCTTCTGAGGAATCAGAGAGCTATCATTGGAGAGGTGCACGCCTTTGATGGTATGATGCTTTACTTGCCCATTCGCTTGCCAGAAACCAACACCATTATAAACCTGACCAAACAGAATGGGGACCCAGTCCAAATGACCATAACATACACAAATGACGTTCTGAGGGATTCACCAAGTATGATGCAGCTGTTCAATATCATCTTCAGAAGAGTTTTGAAGCATATTGGCATGCAGCAAGTGGGAAGAAACTATTTCCACATAACAAGGCCTATCATGATCGACAAATTCAAGTTAGAGTTGTGGCCAGGCTACACAACTTCAATAATGCCATATGAAACAGATGTCCTGCTTTCAGCAGATGTGTCCCACAAAGTATTGAGACAGACTACTGTTCTAGAGTTTCTCTATGAATTGTACAACAGCGGCAGGGCAAGAAACTTCTATGATGAAGCCTGTAAACAACTTATTGGCCAGATAGTTCTCACACGGTATAACAACAAGACATACCGTATTGATGATATCAAGTGGGATACGCATCCAAATCATACCTTCCCTGGGAGATTTAAAGGGGTAGAACGAGACATATCATATGTTGACTACTACAAGGAGGGAAAGTTCTGTCAAAAGGAAGAAATTGATCACTTGCTAGGCAACCACAAAAAGGTCTATGATAAGCAAATCATCGACATGGACCAACCCCTTTTGGTCAGTCGACTGAAAAAGATTCCAGGACAAAAGATGAGGATACAAGATGGAGAGGTTCTTCTTGTCCCTGAGTTATGCTTTTTAACAGGTCTGACAGATGACATGCGGAATGATTTCTCACTGATGAAAGACCTTGCAGTTCACACCAGGGTGGATCCAAAGAGCAGGAACAAATCTCTTCTCTCATTTATGGATGACATTTGCAAGAATCCAGAAAGCTCTAAAGAATTAGGTGGCTGGAATCTGGGTTTTGAACCAGAAACCTTAACCTTGCCTGGAAGAGTTCTACCACCAGAAAAGATATACCAGAGTGGGGGCAGATCGTACAGTTATGATCCAAAGACTGCTGATTGGTCAAGAGAGATGAGGGGAATGCCCCTCTACAGTACTGTCAATCTTAATAACTGGCTGCTCATTTATAGTAGTCGAGACTCAAATAATGCAAAGGATTTCGAACAGACTTTAAAGAAAGTTGGTGGACCCATGGGAATCACTGTTTCTCCTGGTATTGACTGTAGGATTCAGGATGACCGAACAGAAACCTACTTGAATGCCATCAAGAGCAACTACTCTCATGAATTGCAGATGGTTGTTACTATTTTGACAACAAACCGTAAAGATAGATATGATGCCATCAAGAAGCTTTGTTGTTTGGAGAAGCCAGTTCCTTCTCAGGTTATAGTGGGCCGCACCATCAGCAAGAAGCAGATGTTGATGAGTGTCTCTACAAAGATTGCCATTCAGTTGAACTGCAAACTTGGTGGTGAAGCCTGGGCTCTGGAGATTCCGCTGAAAAAGACCATGGTGATTGGGATCGACACCTACCATGATTCATCAGCTAAAGGTCGCTCTGTTGGTGGCTTTGTGGCAAGTGTGAACCAGACTCTAACAAAGTATTACTCCAGAGTTTCATTTCAACACACTGGGATGGAGTTCATTGATGCTTTGAAAACGAACATGACAGCTGCCTTGAGGCGTTATCAAGAGGTCAATCGAGACTTGCCGGAGCGAATCATGATCTATCGTGATGGTGTTGGAGATGGACAGTTGCGAACTGTGGTAGAACACGAGGTTCCACAGTTAAAGGCTTCCTTCAGTGAAGTTTCGGGAGGGTATAAACCCAAATTTTCTGTGATCATAGTGAAGAAGCGAATCAGTGCAAGGCTGTTTAATAAAGGTGACGGAGTCAACTTGACTAACCCTCCCCCTGGAACTGTTGTGGACACTGACATCACTCGGAAAGACTGCACCATGAGACAGTCACCTACAAACGAGAAAAGTGCTGTTACGGAGGTGAAAGTGGTTGATGTTGAGAAACGCAGAGCAAAAGATTCCTCTGGGAAAAACTATGAATATGAATTGAAAGTGAAATGGTCGGACGAAAGCCAATATAACATATTTCGACGCTACAGCATGTTCTTTGACTTGAGGGCTGGTTTAAAGAATCTCTTTCAAGATAAGCAACATTTTGGTATTACTGTTCCAGAATTGCCTGTTACTAGATTTGCTGGTGGAATGCTTTTTGGAGCTTTTTCAAAGAAACAGTGTAAAAATGTCGAAGAGTTTTGCCAGAAAGTCATCCAACTGCCTTCAGTTGCATCTCAGTCTGAAATTGTTCTGGCATTCTTCAGTCGATGGGCTACAGATGGAATTTCCCGAAATGATAATGACAAAGGAAAGTTGGCATCCCCTGCAAGAAACGACGAGCAGATTGTGGAAAGATACCAGTCAGTTGCAGCATTCACTGGCAGTGGCAGAGGAGAAATGAGTTTGAAAGAAAATGAATTAGTGACAGTCATTGAAAAGAACAACACAGGATGGTGGCTTGTAGCAAATTCCAGAGGGGACCATGGCTTTGCCCCGGCAACATTTCTTGAGCCAATAGATACTGTCCATGGACAAGAGGAGGAAGAATGGAGAGACATTGACAATGATGATTGTCACTGGATAACAGTCGCACCATACACAGCCAAGAGTGATGACGAACTAAGCTACAGGGCAGGTGAAGAAGTTGAAGTTCTTGCCACCAGTAATTTTGGCTGGTGGAAAATTAGATTGAGGGGTGAAGTTGGCCTGACACCTGGATCGAACCTGACTCCGAAATCAAGACACGACAGCATGGATCCCTTCATGACAGACGAACAGCGAAGAAAGGTTAATGGCAGCTTCACGTACAATACAATGCAACGATTTTTACATTCCACGATGAAACAAGACAACTGGCTACAGCTTCTCCTTCAAGAAGAGCATCCTGAAGGTTGCTCAGATGAACCGCACGAAAAAAGTGACTCGAATCATTTGCAAAATGGCATGCAACCACATGACCTTGATCCCCCAATGAGTTCTACGTATTCGAGCATATATGCAAGCATAAGGGCGCCGCCCCCGAGAAGAGATTCAGGTAAAACGTCGAAGCCTGCAGTCAACAATGAAGATATTCCCAAGCCAAAAGTGTTGCGATCGCAGTCCACGCCTCATGTATTAGAATATGCTACTGTGGATATCAGCTCACCATCTGCGAGGAAGAGAACTCCCGAGAGTAATACAGAAAATACCAGAGAAAGCATTCCTCAATATGCCTCTGTTATTCCCAAACACCTGAGAGCTAAACCCAGACCCCGCAGCTTCAGTGAAGACATCGCGGAAGAAGTGAGCCTACCGGCGCACAGTCCATCTCCTGAGCTCCCGCCACCTCCCCCATCAGTGCTGTTAAGCAATTTCGAAGAAGAAAATGATCCAAGTTACGCAACAGTGAGGGAATACAATGCATCGTCAAACAGCTCGTCGCCAAGAGTGCTGCGTACTCCCGATGGCGACGTTCGCTACGGAAGTCGAAAGTATCATAATTTTCTTCGAGTGGAGAATCAAACAAATACACCCGGCGAGCATTTTGTAGCCATAACAAATTATTCTCCAACCCCTGATCGACATGATGACATGCCGCTTGCCGCTGGTGAAACTGTGCGCTTGCTCACAGAGGACGGCTCGTGGGCTTTTGTGTCAGCAGTGGATGCCACCAGGAGGAGAGGCTGGGTTCCCGCATCAATACTAAAAAAGGGCGGAGGGCTGCAGTCCTCTTATTCAAGGCGATCCATGTCGGTTGGCGACATCTATAATGCGTGTCTGCAGGACGAAGTTGCTATGCAACCAAAGAAATTATTAGTATCATCACAGTTTCCCAAGCGACCCATACCCACTCCCCGCTCTGATCTGGAAAAACCATCGGAGGACCCAATGGGAGCCCCTGCAGAAATGGCCCCTCCATTACCTGGTGGCTCCAAACAAAACCGCAAGCCTGGAAAAATCAATGCTCATTACTTTTCAAGGGAGGACTTCACAACGAACAACAGCAAATGTATTAGTATTCGTAAAGGTGAAGTTGCTCAGCTGTTGGAGGTGCAACCCTCTGGCTGGTGGAAGATGAATGTTGAGGGCGTGGTCGGATGGACACCTGGCGACTTCTGGGACATTTTGCAGGATGATGATGAGGAGGATGATTTTGCCAATAACAATCAGAGAGATAGATCAAGAAACAGTTCGTTTGGTGACGAGTTATGGTATTATGGTAAAATGTCGCGTCAAAAATGTGAAGAACTGATGATGAGGGGTGCCAAAGAACTGGATTATCTGATAAGAGAAAGCACTCAAAGGTTTGCGTCATTTGTTCTCTCAGTCAAGTATGGCGGAAGAATCCGTCACTTTCCCATAGAACTGACACCCAGTGGTCGATATGTGATTGGAAAGCACGCTTTTGATGGTTTGACGGAGATTGTTACCTTCTACAAACAAAATGCTTTATTTTATACCCAAAACAAGAACCCCGTTACCCTGGGAGATTCATTCCGAGGAATGTAA

Transcript

Ahemp_015608-T1

CATGCGATAATCAATGCATTGCTTGGTACTAGCGAATGGCGAATGTTAAACTGTGAAGCGTGACAACTTGAAGACATCATGACAGGGCGAGCCAGGGGAAGAAGCAGGGGTCGTGGGCGAGGTGGAGGTGGCGGCGATGCGGCTCGAAGACCTGGAGAGGGTCCTCAAGAAGCTCAGCGTGAACAAGCTGCTCCTGTAGGACGAGGTAGATCAAGGGGACCCCCACCAGCACAAGTCCCTGCCCCAGCTCCTCAAAGGCCACCACCAGCACAAGCAGAACCCCCCACCCAGGCCATGGCAAAGATGGCTGTATCCCAGGAACAGAGACCCCCAAGGAGATCCAGGGACATTGTTGATGATGTTGCCACCAAGCCACAGCACATTGTTGACAAGAAAGGGAGCACTGGCGGCAAAATAACCTTGCTTACAAATCACTTCAAGTTGAGGACCAAACCTGAATTTGGAGTTTACCAGTATAATGTGAGCTTTAATCCTGAACAGGAGTCAAAGAGAGTAAGAGTTGCTCTTCTGAGGAATCAGAGAGCTATCATTGGAGAGGTGCACGCCTTTGATGGTATGATGCTTTACTTGCCCATTCGCTTGCCAGAAACCAACACCATTATAAACCTGACCAAACAGAATGGGGACCCAGTCCAAATGACCATAACATACACAAATGACGTTCTGAGGGATTCACCAAGTATGATGCAGCTGTTCAATATCATCTTCAGAAGAGTTTTGAAGCATATTGGCATGCAGCAAGTGGGAAGAAACTATTTCCACATAACAAGGCCTATCATGATCGACAAATTCAAGTTAGAGTTGTGGCCAGGCTACACAACTTCAATAATGCCATATGAAACAGATGTCCTGCTTTCAGCAGATGTGTCCCACAAAGTATTGAGACAGACTACTGTTCTAGAGTTTCTCTATGAATTGTACAACAGCGGCAGGGCAAGAAACTTCTATGATGAAGCCTGTAAACAACTTATTGGCCAGATAGTTCTCACACGGTATAACAACAAGACATACCGTATTGATGATATCAAGTGGGATACGCATCCAAATCATACCTTCCCTGGGAGATTTAAAGGGGTAGAACGAGACATATCATATGTTGACTACTACAAGGAGGGAAAGTTCTGTCAAAAGGAAGAAATTGATCACTTGCTAGGCAACCACAAAAAGGTCTATGATAAGCAAATCATCGACATGGACCAACCCCTTTTGGTCAGTCGACTGAAAAAGATTCCAGGACAAAAGATGAGGATACAAGATGGAGAGGTTCTTCTTGTCCCTGAGTTATGCTTTTTAACAGGTCTGACAGATGACATGCGGAATGATTTCTCACTGATGAAAGACCTTGCAGTTCACACCAGGGTGGATCCAAAGAGCAGGAACAAATCTCTTCTCTCATTTATGGATGACATTTGCAAGAATCCAGAAAGCTCTAAAGAATTAGGTGGCTGGAATCTGGGTTTTGAACCAGAAACCTTAACCTTGCCTGGAAGAGTTCTACCACCAGAAAAGATATACCAGAGTGGGGGCAGATCGTACAGTTATGATCCAAAGACTGCTGATTGGTCAAGAGAGATGAGGGGAATGCCCCTCTACAGTACTGTCAATCTTAATAACTGGCTGCTCATTTATAGTAGTCGAGACTCAAATAATGCAAAGGATTTCGAACAGACTTTAAAGAAAGTTGGTGGACCCATGGGAATCACTGTTTCTCCTGGTATTGACTGTAGGATTCAGGATGACCGAACAGAAACCTACTTGAATGCCATCAAGAGCAACTACTCTCATGAATTGCAGATGGTTGTTACTATTTTGACAACAAACCGTAAAGATAGATATGATGCCATCAAGAAGCTTTGTTGTTTGGAGAAGCCAGTTCCTTCTCAGGTTATAGTGGGCCGCACCATCAGCAAGAAGCAGATGTTGATGAGTGTCTCTACAAAGATTGCCATTCAGTTGAACTGCAAACTTGGTGGTGAAGCCTGGGCTCTGGAGATTCCGCTGAAAAAGACCATGGTGATTGGGATCGACACCTACCATGATTCATCAGCTAAAGGTCGCTCTGTTGGTGGCTTTGTGGCAAGTGTGAACCAGACTCTAACAAAGTATTACTCCAGAGTTTCATTTCAACACACTGGGATGGAGTTCATTGATGCTTTGAAAACGAACATGACAGCTGCCTTGAGGCGTTATCAAGAGGTCAATCGAGACTTGCCGGAGCGAATCATGATCTATCGTGATGGTGTTGGAGATGGACAGTTGCGAACTGTGGTAGAACACGAGGTTCCACAGTTAAAGGCTTCCTTCAGTGAAGTTTCGGGAGGGTATAAACCCAAATTTTCTGTGATCATAGTGAAGAAGCGAATCAGTGCAAGGCTGTTTAATAAAGGTGACGGAGTCAACTTGACTAACCCTCCCCCTGGAACTGTTGTGGACACTGACATCACTCGGAAAGACTGCACCATGAGACAGTCACCTACAAACGAGAAAAGTGCTGTTACGGAGGTGAAAGTGGTTGATGTTGAGAAACGCAGAGCAAAAGATTCCTCTGGGAAAAACTATGAATATGAATTGAAAGTGAAATGGTCGGACGAAAGCCAATATAACATATTTCGACGCTACAGCATGTTCTTTGACTTGAGGGCTGGTTTAAAGAATCTCTTTCAAGATAAGCAACATTTTGGTATTACTGTTCCAGAATTGCCTGTTACTAGATTTGCTGGTGGAATGCTTTTTGGAGCTTTTTCAAAGAAACAGTGTAAAAATGTCGAAGAGTTTTGCCAGAAAGTCATCCAACTGCCTTCAGTTGCATCTCAGTCTGAAATTGTTCTGGCATTCTTCAGTCGATGGGCTACAGATGGAATTTCCCGAAATGATAATGACAAAGGAAAGTTGGCATCCCCTGCAAGAAACGACGAGCAGATTGTGGAAAGATACCAGTCAGTTGCAGCATTCACTGGCAGTGGCAGAGGAGAAATGAGTTTGAAAGAAAATGAATTAGTGACAGTCATTGAAAAGAACAACACAGGATGGTGGCTTGTAGCAAATTCCAGAGGGGACCATGGCTTTGCCCCGGCAACATTTCTTGAGCCAATAGATACTGTCCATGGACAAGAGGAGGAAGAATGGAGAGACATTGACAATGATGATTGTCACTGGATAACAGTCGCACCATACACAGCCAAGAGTGATGACGAACTAAGCTACAGGGCAGGTGAAGAAGTTGAAGTTCTTGCCACCAGTAATTTTGGCTGGTGGAAAATTAGATTGAGGGGTGAAGTTGGCCTGACACCTGGATCGAACCTGACTCCGAAATCAAGACACGACAGCATGGATCCCTTCATGACAGACGAACAGCGAAGAAAGGTTAATGGCAGCTTCACGTACAATACAATGCAACGATTTTTACATTCCACGATGAAACAAGACAACTGGCTACAGCTTCTCCTTCAAGAAGAGCATCCTGAAGGTTGCTCAGATGAACCGCACGAAAAAAGTGACTCGAATCATTTGCAAAATGGCATGCAACCACATGACCTTGATCCCCCAATGAGTTCTACGTATTCGAGCATATATGCAAGCATAAGGGCGCCGCCCCCGAGAAGAGATTCAGGTAAAACGTCGAAGCCTGCAGTCAACAATGAAGATATTCCCAAGCCAAAAGTGTTGCGATCGCAGTCCACGCCTCATGTATTAGAATATGCTACTGTGGATATCAGCTCACCATCTGCGAGGAAGAGAACTCCCGAGAGTAATACAGAAAATACCAGAGAAAGCATTCCTCAATATGCCTCTGTTATTCCCAAACACCTGAGAGCTAAACCCAGACCCCGCAGCTTCAGTGAAGACATCGCGGAAGAAGTGAGCCTACCGGCGCACAGTCCATCTCCTGAGCTCCCGCCACCTCCCCCATCAGTGCTGTTAAGCAATTTCGAAGAAGAAAATGATCCAAGTTACGCAACAGTGAGGGAATACAATGCATCGTCAAACAGCTCGTCGCCAAGAGTGCTGCGTACTCCCGATGGCGACGTTCGCTACGGAAGTCGAAAGTATCATAATTTTCTTCGAGTGGAGAATCAAACAAATACACCCGGCGAGCATTTTGTAGCCATAACAAATTATTCTCCAACCCCTGATCGACATGATGACATGCCGCTTGCCGCTGGTGAAACTGTGCGCTTGCTCACAGAGGACGGCTCGTGGGCTTTTGTGTCAGCAGTGGATGCCACCAGGAGGAGAGGCTGGGTTCCCGCATCAATACTAAAAAAGGGCGGAGGGCTGCAGTCCTCTTATTCAAGGCGATCCATGTCGGTTGGCGACATCTATAATGCGTGTCTGCAGGACGAAGTTGCTATGCAACCAAAGAAATTATTAGTATCATCACAGTTTCCCAAGCGACCCATACCCACTCCCCGCTCTGATCTGGAAAAACCATCGGAGGACCCAATGGGAGCCCCTGCAGAAATGGCCCCTCCATTACCTGGTGGCTCCAAACAAAACCGCAAGCCTGGAAAAATCAATGCTCATTACTTTTCAAGGGAGGACTTCACAACGAACAACAGCAAATGTATTAGTATTCGTAAAGGTGAAGTTGCTCAGCTGTTGGAGGTGCAACCCTCTGGCTGGTGGAAGATGAATGTTGAGGGCGTGGTCGGATGGACACCTGGCGACTTCTGGGACATTTTGCAGGATGATGATGAGGAGGATGATTTTGCCAATAACAATCAGAGAGATAGATCAAGAAACAGTTCGTTTGGTGACGAGTTATGGTATTATGGTAAAATGTCGCGTCAAAAATGTGAAGAACTGATGATGAGGGGTGCCAAAGAACTGGATTATCTGATAAGAGAAAGCACTCAAAGGTTTGCGTCATTTGTTCTCTCAGTCAAGTATGGCGGAAGAATCCGTCACTTTCCCATAGAACTGACACCCAGTGGTCGATATGTGATTGGAAAGCACGCTTTTGATGGTTTGACGGAGATTGTTACCTTCTACAAACAAAATGCTTTATTTTATACCCAAAACAAGAACCCCGTTACCCTGGGAGATTCATTCCGAGGAATGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JMB7	Piwi-like protein 1 OS=Mus musculus OX=10090 GN=Piwil1 PE=1 SV=1
Q8UVX0	Piwi-like protein 1 OS=Danio rerio OX=7955 GN=piwil1 PE=1 SV=1
Q96J94	Piwi-like protein 1 OS=Homo sapiens OX=9606 GN=PIWIL1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004274 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02171 all species →	Piwi	Piwi domain	Family	Interproscan
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan
PF02170 all species →	PAZ	PAZ domain	Domain	Interproscan
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF00787 all species →	PX	PX domain	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036085 all species →	Homologous_superfamily	PAZ domain superfamily	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR003165 all species →	Domain	Piwi domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR003100 all species →	Domain	PAZ domain	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22891 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0031047 all species →	Biological Process	regulatory ncRNA-mediated gene silencing	Interproscan
GO:0034584 all species →	Molecular Function	piRNA binding	Interproscan
GO:0043186 all species →	Cellular Component	P granule	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ahemp_015608-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora hemprichii tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora hemprichii, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →