Gene detail

Detailed information of Ahemp_017384-T1 in Acropora hemprichii

Genomic Location: scaffold_110:99989...104886
NR annotation: XP_015758186.1, PREDICTED: slit homolog 3 protein-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Ahemp_017384-T1

AGTAGACCATCATTCCAACTTCAGGCCAACATGACGGATACAAGAACTTTACACGGAGTGAACGGTTTATTGATCTGTGTTCTGCTGATTTTGTTCAATGTGTCGACTTCAGCAAGCCAGCCTTGCCCTGCTGGATTTACGGGAAGCAACTGTTCCACAGATATCGATGATTGCCTCAACAACAACTGCTCGGGGAATGGAAATTGCAGTGATCGAGTAAATGGATTCTACTGTTATTGTAATGATGGTTATTATGGGATCACATGCAACATAGAAGCTGGACCTTGTTCTCCAAATCCGTGTAAAAATAATGGCACTTGTTTTCAAGATGAAAACAATTTGGTTTACTGCAACTGCACATCTGAATTTGAAGGAGAAAGATGCGAATCAGAAAAGCCTCCAAAAATATTTACAGTCACCCTAACAATTATAGACAGGATTTTTGTCGATGATTACAAAGACCTGACAAAATCGCTAACGCTTGGCTTGATAGAGGACCTAAATAGCATTTTCAAACCTTTCCTGGAACAAAACTTTGACGGATTTTCGACCATTGTGTTTACCGGGTTTTTCCAAGGAAGTGTTGGTGCCATCTTTGATGTAATATTCGCAGCGACATCAGAGATCAACGCGACAAGTATCGTTAAAGCCTTCTCCAGGGCAAATGGCACGAATCAACTGAGATTTGAGTTGTTGGGAACAATAAAAGCAGTAAACAAATTGCATACTTCTACTGGAGCTACCGACTCTCTAGTTACAGAGTCCTCGTCTGAACTCGAGCCATGGATCATTGCCTTGATTGTCTTTCTTATAATCTTTGCCATTCTTCTTGTTGTTATCGTTATCCTGGTGTTGAAGACTCGTCGAAAGCATAATGCGCGCAAGGCGGAAGTCGCTCTTGATCAGTACTGGGACCTGCACACGCACATCAAAAGTATAAGGCGGACTGATTACAGCAACGATATTTACATAAATGGCGGTGAACAGGTAATTGTTAGAAGAAATGGACCGAGAGGAAGTTTAAAAGTCGCGATCGGGAGATCTGAAAAAAAAAAACGGAATTTTAGGAAATGGGTTTTCTCTAGCTGGCTGGTGTGTCTGCAGTTACTACTTGACAACGTACTCCTCCTCCGTTCTCTTGCGAACGACTCTTACGATGTTGGAAGAAAGAGTACAATCTTGAGAGAGCAAATGAATTCAACGAAAGGACAACTCCTTACTTAAGAGATTGTCGCTCATCCTCAATTTCGCTTGTTTCAATGGAATTGGTCTCGATCATTGAACCGAAAACCAGGGATTAGTTCATACCACACAAGTGAATAGTGCTTTTGGCTGATTGGCCACCTCGGAGGTGAAATACAAAAAATTGATGTTTTTTCAGTTTTTCACAGATAAAGTAGGTTTTGGTGCTATTTGCTCAACTTGTGTTGTATATACTCAAAAACAAGTATTCACTTTGGTGTCGGTGAAATTGGTGGATATTTACGTCGCCGCTTTACGGTTCGGCAAAAATCTGCCACTATTCACCACCGCCTCTACCTTAGTGAACAGTTAAATAGTTTACAACTCACATTGAATTTTTCTACATACCACTGCGAATGGATACAAACCATATCGCGCAAGCAGTAACAATGTTAAGTGCTTAAGACGGCGACATTAATTAAATATTAGCTTTGCTGTTACTTGCTCTTAGAAGTAAATCTACCGTAACATCGTAAGCATTTAGCAGGTGATCATTCGATCTAGTTTCTCGTTGACAAGTGGGTGTGGTATAATAAAATTGCATTGCAATTGAACCCCTCGTGAAGGTTTGGGAGAACTCGAAAAAGCTGTGGAGACACTCGCCTGCGGCTCGTGTTCCCACAGCATTTCTCGTTCTCCCAAACCTCCACTTGTGTTTCTATAACTCGATAGAAACACGGAAAATGTTTTCTATTTCTTAATTAGGTTATGCTGCACGTGCGAAACATGTAAAAATACCTGCAGCACGTGCAGCATGATTATTTTCGCACATTAAAAATAAACAATAATGAAACAAAAAAAAATAACGATAACGTTGCCGTAAATGAAGCAGATGTTTAAGTTTTTATTTGTCCCTGTCCTGTGTATGCTTTTTAACAAGCCTTGCAAGTTTTTGTTCAGGCATTGTACGCATTATAGTTATCTCGATAGTCTTAGATACGCAGACAACATGTGAAATTTTGCCGTGCATCGGGCTTACCAAGGCAATTACAGAGAAACCGAGCAAAACATTCAGCGATGAAGTGTTTCGATTGGAACTCGTTGCAAACCTTATTGATTGATTCCGTTCATCCTTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR050906	Family	Notch signaling pathway	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24044	NOTCH LIGAND FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005112	Molecular Function	Notch binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan