Gene detail

Detailed information of Ahemp_017560-T1 in Acropora hemprichii

Genomic Location: scaffold_113:607685...609822
NR annotation: XP_015759017.1, PREDICTED: protein lin-12-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Ahemp_017560-T1

TTGTTAACTGTCAACGTTACCACTGCCGTTATATTTCAACTGCTGAACGATTGTATCACATTGCAGTTTTTGTTTTCCAAGGTTTAGAATTTCAGCAAGGGACACAAGAATAATTTTCCTGCTTGGAGTACGAACTCACAACATTCCGCAAAACAGCTGGATCTGTGAAGATAAATCAAAGATGAGTTCTTAGCACAATTTCAACAGTTTTTCGGGTTAAATGGCGAGGAATCATTGAGAATGAGCAGCGTAACTACGCCTTGTCTTCACCAAGCTGTTTGCTCGGGACGATTTCATCAAACTCGTTTGTTTCTAGACATTGGAGTGAAGCCGTCTATGACAGACAACCAAGGACGCACTCCTCTTATGCTGGCCGCTTGCATCATAAATGAGACTGTAGCGTTACGTATTGCACGTCTCCTGTTAAGTCGTGGAGCACGTGTGGATTGCACGGACTTCCTCGGAAGGACGGCGCTGTCGTACGCATGCGAGAAAGGTCGCTGTAGGCTGGTTAGTCTCCTTTTAGATGACGATTCTGCTGATGTAAACATGGCTGACAGAGACGGCAATACACCTCTGATGTACGCTGCAATGTCGGGCGATGTTGCAACACTTAGGGAAATATTACAGGTTGTAGTGAAGTACAGACTCAGCGTGGACCTGCGAAACAAGAAAGGCTTTTCAGCTTATTTACTCGCTGCGCGAATGGCCCACACGGAATGGGCGAAGATTCTGAAAACAGAGGCGAAGGCTTCCGTGGATGTTAGGGATACAGAATTCTTCTTAAGTGGCAAGGAATGGGCTAGAAAAGTAAGAAGAAATTTGGAAGAAGGTGAAGAAACGAAAGCAAGGAAAGCACGTCCAAATAGCTCTATGGAGTTTGGTCGCACTTCCGCGATTAACCCGCGGGTATTTTCCCGTTTAAGAACTCGCAGTGTAAATATGACGTCACGCAATACCGTGACAGGAAATCCTTCGTACCCTTACGTGGAGGAAGAAACTAGCAACGAGCATGATTCAATGACAAGTTCTGATAGTTCATCTGAAAATCAAGAAACCAGTATACCTTCAAATGTTCGGACGCATTCTCATGTTTTACACGCCATTTTTAGCCAGTATGCCAAGATTGATACCAGGCCATCGGTCACTATAGCTGAGCGGAGGTTCCTTAGTCCTTCATCAGCAGTTGACTTAAGTACCCCGTTAAAATCAACGACTCGAAATTCAAGTCTTAGAAAAACCAGAAAGAAAATAGTGTCGCCAGTGTAACTCAGTATGGACAATTTTTACGTCGTTGGGAGACAAGACAACCGGACTTTTGAATTTATTGTCGAAGAACTCAAGACTGGAGTTTGTGTAAAAATCATGTGATGACATATAATAGATATCAAGATATACCAAAGTATGGCCTCAAATTTCACGTAAAATAAAGTCTCAAGTTAGCTCCACCCAATCCACAAAAGAACGAAATTAAAGGCAAATAAGTGACCAGCGGCAGGGATTAAAACAATTTGGTTTGATTCACGTGGGTAAAATCTAGTCTCGTTTAAATCTGTTGTTATCAGCTATGGACAGCTCTTTGAGTCAAGGCAGACGATACCATGGGACTTAAGAAATATAAATTTGTATTACTGTAAACATACTGCCACCTCTGGCTTTGAAGGAAGCAGTGTTGCTCTCATCTCTTCTAATCTTTAAAAATTTCATATATATGTTCCTCTCCAAGCGGTCTCAGTTTTAAGATACAAAACAGAGGCAGCGGCAAACACTTGAAATAACACATAGTTAAAAGTTATTTACCTGATCTCTCGTATGCCTTAACATACATCTTCAAAAGTGATCGTTAATTACAAAGCTTGAGTACAGTGGAGCCTCGCTCTACAGACACTCGCTAATAAGGACATCCGTTTATAATGGACACTTTCGTTTGTCCCGACGAAAAGCTGTTTTATTCTCCTTAAATTAGTCTGCTTAGTAAGAAAATCGATAATACGGGCAACGGACAATTTTCTGTGTCCCGAGTCTCAAAGTCTGTTGTATGGTCAACCGCGCTTTACAGACATTGTATGTAACATGAGCCAAACATACTAATGGAAGGAAAATGTATATGTGTGCTAATCCTGTGCATTAAATTTATA

Protein

Uniprot

Uniprot term	Description
Q6RI86	Transient receptor potential cation channel subfamily A member 1 OS=Rattus norvegicus OX=10116 GN=Trpa1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR050842	Family	Cul2-RING E3 Ligase Substrate-Recognition Fem-1	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24173	ANKYRIN REPEAT CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K25576	AVO2; target of rapamycin complex 2 subunit AVO2	-	Membrane trafficking	ko04131	deepkoala