Detailed information of Ahemp_017809-T1 in Acropora hemprichii

Genomic Location: scaffold_119:701862...712755
NR annotation: XP_044169500.1, lupus La protein-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P05455Lupus La protein OS=Homo sapiens OX=9606 GN=SSB PE=1 SV=2
P32067Lupus La protein homolog OS=Mus musculus OX=10090 GN=Ssb PE=1 SV=1
P10881Lupus La protein homolog OS=Bos taurus OX=9913 GN=SSB PE=2 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00076RRM_1RNA recognition motifDomainInterproscan
PF05383LaLa domainDomainInterproscan
PF08777RRM_3RNA binding motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000504DomainRNA recognition motif domainInterproscan
IPR014886DomainLa protein, xRRM domainInterproscan
IPR045180FamilyLa domain containing proteinInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR006630DomainLa-type HTH domainInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR002344FamilyLupus La proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22792LUPUS LA PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0008033Biological ProcesstRNA processingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:1990904Cellular Componentribonucleoprotein complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11090LA, SSB; lupus La protein-Systemic lupus erythematosusko05322deepkoala

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