Gene detail

Detailed information of Ahemp_017976-T1 in Acropora hemprichii

Genomic Location: scaffold_124:13145...22567
NR annotation: XP_029211172.2, DNA repair protein REV1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Ahemp_017976-T1

atggaggcagagaagagagaccctgggaacgagGACGAATCTCCCACTCAGTTGGCAGAGAAGATCCGTGGTGAAATCAAGGAATCGACCGGCTGCACAGCTTCAGTTGGTATCGGTGCTAATGTCCTGTTGGCCAGAATGTGCACAAGAGTAGCTAAACCAAACGGCTGTTATCACATAGCAGCTACTGATGACATCAATCAGTTCATGGGTACGCAAAAGGCCACTGACCTCCCAGGAGTCGGTTGGGCCCTGGGGCAAAAACTGGAAACACTAGGTGTTAAAACTTGTGTAGACTTACAGAAGTTAACCTTACGGACGCTGCAGAGAGAGTTTGGACCCAAGACAGGCCTACTGTTACACCAGTACTGTCGTGGAGTTGATGAAAGGACTCTTAAAACGGAACGTGAAAGGAAGTCAGTCTCAGCAGAAATCAACTATGGTATTCGTTTTACAAAGGAAAGTGAGGTGGTAAATTTTATCAATGAACTGGCTAAGGAAGTACAAAAGAGACTGCAAGCACTGGAAACAAGAGGCAGATGTATAACTCTTAAGATGAAAGTACGAAAAGCAGGAGCACCAACCCCGCGAAAATTCATGGGACACGGAATATGTGACAACATCGCTCGTTCCTGTACTATACCATCTGTCACTGATGACGCACAAGTCATATCGAAACAATGTCACGCACTCTTGAAACAGCTGAATGTCACTCCTGAGGATATGCGAGGAATGGGAATACAAGTTAGTAAACTGGATGATAAGAATTCTAACACAGACAGCAAGAATTCAAGGTCATTATTTGATTTCATGAAACCAAAAGTGACTTCGACTGAAGGTATCGCTGTATCAGCTGTCTTGGAAAGCCAAGTTGAAAAGATTGTGGAAAATGAAGCTGGTTCCGTTTCAAAAAGTCCTGAAAATGAGGGAACCAAACTCCCTCGTTTACCTAGATTCTCGCCTCAGATCGCTGAATATGCCAGTGTTAACACACCCAGGAAAAGACTAGGAGGCGTGGACGAAAGCCTGTATCTACCATCTCCGTCGCAAATTGATCCCTCGGTTTTGGAGGCTCTTCCCGATGATATAAGAAGAAGCATTGAGAGATCATATGCTGCCAGAAATGAGAAGAGTTCCCTGAATGGAAACAATGAGCAAGTCGAACCCGAGTGTCAACCGCAGACCCAGCAAAAGGATGCAAAACCCAGGCAGTGTAAAGTGACGCTTAAGGCGGCTCGCTCGCTGTTCGAAGAGAACTCCTCACCCGAGTCCGCTCAGCAGTTGTCAGACCTTCTACCTTCGCCGTCTCAAATCGACCCAGAATTCCTATTGGCCCTTCCTGATCACTTTAGACAAGAAATAGAACAAGCTTATAGAGTCAAGAACTTGAAACTTACACGTGGTCGCGGAGAGGCCGTAGAGACGATAACTCATCAAGTTGAGGTCCCACAAACCAAACAAGATATGAAAATGAGTACAGAGCATGTCCAAGCAGGTGGTATCCAGAACACAAAGAATACTAAAATTAACACTCCGACTGAACAGGCGCGTCTGGGGGAAGCTGTCACACTTCCACAAGTAAAGCAAGTGATCACACAATGGACGCAAGCTTATGAAGTCCCACTTAGGGAGGACATTGCGTTTTTCACTGATTACCTGCTACAACTTGTTGAAACAAAGAACTTAGAGCAGCTGTGGAGAGTGCTGAGATTCCTTGACAGGTATAACTGTAATCAACCTCGCTCCCAGGGTCCCTTATGTCCCCACCCCAAGGGGAACGAGAGATGAAAGACCGCCGTTTGGTCACGTGTCTCAGTGCCAAATTTATCTTAAAGGGTGTCAATTTTTCAGGATACTGTCGCTGCTAGTATTTGTCACATGCGAAACCCGCTTAGCTTCGCTCCTGGAAAACTCTCTTTCGATTTCGCAGCAAAGCTTTATCATATCTACTACATTGCCTACAACATTTGAAACTGGGTCTGGAAACTACAAAAGCCCAAAGGGGCCACTGATCAATTTTAGAATTAGACTTGGACTTTCTAATCCAATCGACTGAGGCAACTTTCATCGCTTCAACAGAACAATAAAACGGACGTGAAAATGAAAGTGTAATTTAGGATTCATGTTAGGAAATGGAAGTGATTTGAGAGTGTTCACCTGGGATAACGTCGTCTACTACCAACCCGGATTCCGTCTGTTCGATTACTCCATCCGCCACATTGACCCTACCCCAAAGTATGATGGTCTATTCCGTTGGTTTTACGGTGTCTTAATTTTTTTCGGTTTTTATGTTTCATCTTTTGGTTTTGGTTTTTCACTTCTTGGTTTTTGTTTTTCATTTTTTGGTTTTTGCTTTTAATTTGTTGCGTTTTGTTTTTTTGGTTTTTGTTTTTCATTTTTTGTTTTTTGTTCTTCGTTTTTTGGGTTTTGTTTTACATTTCTGGTTTATGTTTTTTCCTTTCTCGTTTTTTTTGCTTTGGTTTTTGCTTTGCTTCTTTTAATTTTTTTATTCTTAATTTGAAAC

Protein

Uniprot

Uniprot term	Description
Q9UBZ9	DNA repair protein REV1 OS=Homo sapiens OX=9606 GN=REV1 PE=1 SV=1
Q920Q2	DNA repair protein REV1 OS=Mus musculus OX=10090 GN=Rev1 PE=1 SV=1
Q5R4N7	DNA repair protein REV1 OS=Pongo abelii OX=9601 GN=REV1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14377	UBM	Ubiquitin binding region	Motif	Interproscan
PF11799	IMS_C	impB/mucB/samB family C-terminal domain	Domain	Interproscan
PF21704	POLH-Rev1_HhH	DNApol eta/Rev1, HhH motif	Motif	Interproscan
PF16727	REV1_C	DNA repair protein REV1 C-terminal domain	Domain	Interproscan
PF00817	IMS	impB/mucB/samB family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047346	Conserved_site	DNA repair protein REV1, ubiquitin-binding motif 1/2	Interproscan
IPR025527	Conserved_site	HUWE1/REV1, ubiquitin-binding motif	Interproscan
IPR036775	Homologous_superfamily	DNA polymerase, Y-family, little finger domain superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR017961	Domain	DNA polymerase, Y-family, little finger domain	Interproscan
IPR031991	Domain	DNA repair protein Rev1, C-terminal	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001126	Domain	UmuC domain	Interproscan
IPR038401	Homologous_superfamily	Rev1, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45990	DNA REPAIR PROTEIN REV1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003684	Molecular Function	damaged DNA binding	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0017125	Molecular Function	deoxycytidyl transferase activity	Interproscan
GO:0042276	Biological Process	error-prone translesion synthesis	Interproscan
GO:0070987	Biological Process	error-free translesion synthesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03515	REV1; DNA repair protein REV1	EC:2.7.7.-	DNA repair and recombination proteins	ko03400	deepkoala