Detailed information of Ahemp_017993-T1 in Acropora hemprichii

Genomic Location: scaffold_124:220838...223155
NR annotation: XP_029211241.2, basement membrane-specific heparan sulfate proteoglycan core protein-like isoform X3 [Acropora millepora]
Species abbreviation AHEMP · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q05793Basement membrane-specific heparan sulfate proteoglycan core protein OS=Mus musculus OX=10090 GN=Hspg2 PE=1 SV=1
P98160Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens OX=9606 GN=HSPG2 PE=1 SV=4
Q06561Basement membrane proteoglycan OS=Caenorhabditis elegans OX=6239 GN=unc-52 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001081 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00053
all species →		Laminin_EGFLaminin EGF domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050440
all species →		FamilyLaminin/Netrin Extracellular MatrixInterproscan
IPR000034
all species →		DomainLaminin IVInterproscan
IPR002049
all species →		DomainLaminin-type EGF domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10574
all species →		NETRIN/LAMININ-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0009887
all species →		Biological Processanimal organ morphogenesisInterproscan
GO:0009888
all species →		Biological Processtissue developmentInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for Ahemp_017993-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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