Gene detail

Detailed information of Ahemp_019554-T1 in Acropora hemprichii

Genomic Location: scaffold_216:20599...32511
NR annotation: XP_015778667.1, PREDICTED: uncharacterized protein LOC107356579 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ahemp_019554-T1

ATGTCAATCACAAATGCTACTCATGAGCAACGACAAACTCTGTTTACGATCAAAGAGAACTGTCTCTTGTTGGATCGAAACCCACTTTCAGTGAAAGCTGTAGACTCTTCCGTTTCTTGTGCTCTTCGTTGCGCCAGAGAAAGGCGCTGTAAAAGCGCCAACTTTGTGCCAGGAGATAAGTCTTGTTCCTCTCTCGATAAAACACAGACTACGCATGCTCACCTTGTGCAGTGCGGACATGTCGGAGCTGTGTATTTGAAAAAGGTCAATTCTGATGTTGGTTCCATACCACAACTCGCCATTCCTTCCTGCAAGTCTTTGAGCAAATCTCTTCATCCGAGTGGAGTATACTGGGTTGATCCCGACGGTGGATCCCATGATAACGCGTTCAAGGTATACTGCGAAATGGATACAGATGGAGGGGGCTGGACCCTAGTATGGAGTTACAATTTTACTCGTTACCAGCCCTTTAACGCGACACAGAACGCCGTCACTCCCCGGCCGAACTGGCCAACGAACTACTCTAGAGTCGATGTTCCCATTTCTACCATTCCCCCACTTCACGAAGAAGACTACAATGCGTTCAGTTTTTCGCTTTGGAAGCAATTTGGTGAAGAGATTCTCCTCAAAAGTAACATTATGACCTGGTTTATTTGCTCTCCCGACGTCGGAAATTTTGTCGAATGGAAGGATGGTAGGATCAGCTGCAAAGCTGCCAAGCTTATTTCCAAAGTTCAATGCGTGAGTGATTCGCCGCCAAGCGAATTCAAGCGGGCCGAACATACTTGCGGCCCAAGGATAAAGGAATATGGGGTTTTAAATTTTTATTTTGATGCCTGTAAAACTGATGATCATCCAAATCATAATCCATGCAGATTGCCTGACAAGCTTTTACCACCATCAAATATTGTAATTATGGTTTGCAAGGAAGTTGAAATGGGAAAGCTCAAATGTAAAAGGTACTGGCCAGAGAGTAAGGATGAAAAGCTCAAATTTGGTGGCTTAGATATATCATTGATCTCGGAAAACGTCTTGGGCGAAGGCTTTCTGATGAGAACAATGAATATGAAGTCTCCCAAGGAGGAAATGATGGTTACACAGTTGCAGTACACAGCATGGCCTGATCATGATGTTCCGAAGTCGGCGGAGCCTCTCATAGAAATGAATAAGACTCTCAGTAGTTTGCAAGGCAGCAAGAAACAACAAGTCTTGGTTCATTGTAGTGCGGGTTGTGGTAGAACAGGAACCATTTGTGCTGTGGATTATGCGTGGACTCTGCTAAAGATGCAAAAGACGGACAATTTCAGCGTGTTTGATATTGTGGCAAATCTAAGAAGACAAAGAATGGCAATGGTGCAGACCAAGGAACAGTACGCATTAGTTTATAAGGCTGTGGTATACCTTGTCCAAGAGGAATTAGAAAAGGACCAGATGAAAGGACATACCTACGTGAATGTGCCTATTTCGCCGCCCCCGTTATCACCTCAAGAAGATTCAAATTATGAGAACTGCGAATTTTTGAGAAGTGTGGCTCGATGGAAACAGAGTGATAGGGATAATGGATCACCGCGCAGGTCACTGCCCACAGAGCCGAAGGAAAATAAAAGCGATTTAAAACCAGCTGCAACAAATAAAGCAAGAGAAAGTTCAAATGTTGCACCTGAAAGAACTAATGATTACGTTAATCTTGAATTTCCAAGCAGAAATGAAGCTAATAGTAGCCTTTCTCCGCATGCTCCAGCTGCGAAACCCATGGTTTCAGTAAAACCATCTTTTTTACAAGGAGATTCAAATAAAGCAGCTGTGAATTCTAATGCAATGAAAGGCGGAGTTACAAGCCCTCTTTCTGGTAGACAGCAAGCTCCGACGGTTTCTGATTATGAAATACTCCCGTCTAATGCTGGGCTCAAGTCAGGGAACGCGGGAATAGCCACTCACAAAAATAAAGGATCAGCCGGGGATTATGAAATCCTAGCCCAGTCTGCGTCACGTGATAAGAAAGAGGCCAAGAACGTGCCTGAAGGTCTCTTAATTGACCTTGGAGATGACGCCCCTCCATTGCCCAATAAAAGGCATTCAGTAGGCTCTGCTAGATATGAAAATGTTGCAGTTGCGGCAGCCACCGCCACCGGGATCAGCTGCGGCAAAGCGACAAGTTCTGCTGACGTCGACGATTGGTTGTTGCTAAGCAACCGTGGTTTGCAAGTTCAGAAAGAAAGAAGTACAGGGAACGACAGCAAAGCTTTTCGCACGGTCCCAAACAGAGTGAAGCCATCGTCTGGTCCGAAACGCTGTCCTTTGACGGAAAACTCTTTTGACGATTTCAGCACAAGCACTGACAAAAAGGATCGAAATGTGCAATCACCGACCAAGAGCATGGGAGAATATAGCCTCGTTGGTGCAGCCAGCCCTACCTCACAGACTGACATAGAAAACCCTGCGTTTTTTGCGCAGTTTGATCAAATCACAGCTTCTCAAAAGTCGAATCCATCGGACAAAAGTCTGCAAAAACAAGCCGAGAAGAGCACAGGGCGACCCTCTGTGGGATCATACTGTTTGGTTGGAATCCCTGGGAGCGGGGACACTGGGAAACCTGTGGTGGAGCCTTCTTATGAACTGGTTGGACAATCCAGGCGGCCGCCAGAGAAAACATCACCTAAACGACAAGTCGCAGGAAGTGCTCCAAGCACTGGTGACGCTGTGGAAGTTAACAGGAAGCCCAGTTCAGAACCCTTATCCCAAAATGTTCGACAAAAATTACAGCAGTCTGAGCAAAGGGCACGATCGCCGCCTTATGTCAATACGCATGTGGGCTATTCAAAGGGTGTAAACGACGTCGCCTTTACGGAAGTTCTTAAACCAAAGATTGAAAACGACAACCCGGTTAATCTCCAAGAGAAAGTTCCTGAGTCGCTTGCACAATCTAGCAAAGAAGAAGCAAAACCTGTCACAGATATTTATGCTGTTGTTTCAAAGCAATCCAAAAGCATTGACATGCAGACAAAGTTTCCAGGCCAGTCAAGCAGCCTTAAGAGCTGTTCATCAACCTCAAGCGATGACTCACAAGACGTTCCGACAGTCCCTGAAAAGACCAACGAATCCTATCTTGTTGCAGGTACGATTTCAGTCGTTTTGTAA

Transcript

Ahemp_019554-T1

Protein

Uniprot

Uniprot term	Description
Q9Y2R2	Tyrosine-protein phosphatase non-receptor type 22 OS=Homo sapiens OX=9606 GN=PTPN22 PE=1 SV=2
P35831	Tyrosine-protein phosphatase non-receptor type 12 OS=Mus musculus OX=10090 GN=Ptpn12 PE=1 SV=3
P29352	Tyrosine-protein phosphatase non-receptor type 22 OS=Mus musculus OX=10090 GN=Ptpn22 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00024	PAN_1	PAN domain	Domain	Interproscan
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF01410	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR003609	Domain	PAN/Apple domain	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR000885	Domain	Fibrillar collagen, C-terminal	Interproscan
IPR002181	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR047170	Family	Tyrosine-protein phosphatase non-receptor type 12/18/22	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45983	TYROSINE PHOSPHATSE N18, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0005201	Molecular Function	extracellular matrix structural constituent	Interproscan
GO:0004726	Molecular Function	non-membrane spanning protein tyrosine phosphatase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0035335	Biological Process	peptidyl-tyrosine dephosphorylation	Interproscan