Gene detail

Detailed information of Ahemp_023716-T1 in Acropora hemprichii

Genomic Location: scaffold_4973:56...7526
NR annotation: XP_029180998.2, transcription elongation factor SPT5-like [Acropora millepora]
Species abbreviation AHEMP · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZI08	Transcription elongation factor SPT5 OS=Gallus gallus OX=9031 GN=SUPT5H PE=2 SV=1
O55201	Transcription elongation factor SPT5 OS=Mus musculus OX=10090 GN=Supt5h PE=1 SV=1
O00267	Transcription elongation factor SPT5 OS=Homo sapiens OX=9606 GN=SUPT5H PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005174 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03439 all species →	Spt5-NGN	Early transcription elongation factor of RNA pol II, NGN section	Family	Interproscan
PF11942 all species →	Spt5_N	Spt5 transcription elongation factor, acidic N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005100 all species →	Domain	NGN domain	Interproscan
IPR039659 all species →	Family	Transcription elongation factor SPT5	Interproscan
IPR039385 all species →	Domain	NGN domain, eukaryotic	Interproscan
IPR022581 all species →	Domain	Spt5 transcription elongation factor, N-terminal	Interproscan
IPR041973 all species →	Domain	Spt5, KOW domain repeat 1	Interproscan
IPR036735 all species →	Homologous_superfamily	NusG, N-terminal domain superfamily	Interproscan
IPR006645 all species →	Domain	NusG-like, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11125 all species →	SUPPRESSOR OF TY 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0032044 all species →	Cellular Component	DSIF complex	Interproscan
GO:0032784 all species →	Biological Process	regulation of DNA-templated transcription elongation	Interproscan
GO:0006354 all species →	Biological Process	DNA-templated transcription elongation	Interproscan
GO:0140673 all species →	Biological Process	transcription elongation-coupled chromatin remodeling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ahemp_023716-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.