Gene detail

Detailed information of Ahemp_028675-T1 in Acropora hemprichii

Genomic Location: scaffold_110:388856...396430
NR annotation: XP_015777665.1, PREDICTED: uncharacterized protein LOC107355597 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Ahemp_028675-T1

ATTTTTTTCTTACTGCTGTAACTACTGATTACTTAGGCCCTTCCATTTATGGTTCGCTGAAGGGGACGTCCAAAAAGAGTTGGTTTCCCTCGTCGATTGAGTTCTAGTGTAATGAGGTCACGTTACCATAGCAGCAGAAATTTCTGTCGTACACAGCGAGGCATTGAAAAAAGGCTACACTTCTTTCTTCTCAGAGAAATGAAATGAATTCAAGCGATGAAAACCATAATAACTGAATCCGATGATATCGACTCCTTTTCGTACATGCAAGCATGCCACATCCTACCATCGTATGTGACTTTTCAGTGTCTGCTGTTTGTGCTGATTAATCTCGCGAAAGAGTTCTGTTCAAGGGGAAACCCCCAATAAAAAGGACGAATTTGATAGGTTCTGGGAATACGGAAAAAAGACATTCTAAGAAGTCGACGGTATAGTAACTCATTTCCGATGTCATCTTCATTTGACCGCTTGATCATGATGTGTTGTGCTACGTGATGAACTAAAGAAAGCAGCATTTGATATGTGGAACGTTTCTGCTCTGTTAATGCAGCAGACCCTGACTTGTAAGATGACATGCAAACTTGCGATATTATTCATAATGCAAACCCCGGATTGTAAGATGACATGCAAACTTGCGATATTATTCATAGTGATCTGTCTACACTCGATGCACTTACTGGTCGACGCCACTCCATTGGTGATTGAGCCGGAGCTTCCCATAAATTGCCCGATCGTTAAATGTTCAGCGGGATATCACTCAGATTGTCAATCAAATGGACAACCTCGCTGTAAGCAGTGCAGTTATGGCTTTTATTCGTCACATCCATCACAAACAAAAGAATGCCTCCGATGTTCGCATTGCGGAGAAAACGAATTCGAAGTGCAACCTTGTTCGCCGACTACCAATGTGGTTTGTCAAAAGTGCAGAGAATGTTACTCTCCCTTTCCATTCGTGTTGAAGTCTTGCACAAGAACATCAGACACAATTTGCGGGAATTGCAGTTCAGCCCTAGGATTAGAATGTGACGAAGAGAAAAATCCTGAAGAAAACTCAAGTCGACTCAAAGACAGTAAAAAGGGGCAAAATGAGCAATCTAGGCCAGCGCATCACTCGAAAAGGAAATTCCAAGCAGTGGAAATTCTAGCCGGAGAAACCTCGGCGAGAAGTACACTGGAAACCAACAAAGCAGCCGGTCTGCTGCCGCAGACGAAGATGTCTCCAACCAGAACGTTTACACCTTTTTCAAATCCAAGTACAAAGAAAAAAGAAATTGCTGCGCACAGTGAGACCAAAAAACTAATCAGGAACAAAAGGAGGGACTCAAAGAACGAGACAGCAAACATGACTGAAGTTTTAAGACATCCGTTAGGTGTTTCTCCTGAGCCGCGGGAACCATCTACTGCAGCCGGAGCCGGAGTTATCTTCTCGCCGCATTTTGAACTGGATAAAACGACGACTTACAATTTCTCGCTAGGCACAGAGCCCTCCCAGTTGGCTAATGCGAAAGTTGCTTCCTTAACCTCTGTCATAACTTTACTGAGCCTTCTCAGCCCAGTGGTGTTTGCCATACTGTTTCTCCTCTTTGCCAAGAGGATTAAAAGAACAAGACGCATTCAACAAGAATACCGTGGTACAAATTTTGCTTATTTTGTTCATACTACCATCTTGTGTTTGATTTGCAATGAGAACCTTTAGCAATGACAACTATCATGACGTCCAGGAACACATGCTTTTTGCGGATATTTTTATTTTTCCTGTTGGTCCCATTCTACAATGTTTGCAAAGAACACTGCTGCCGGTCTAGGAGGAGTAAATACTTGGATTCAAGATTTACTATCACAGCGGTCACTACGCCTGCGTTGTCTTCAATTCTGAAAATGTGCTAATTTCACGCGGTCATTTTGCAGAGGGCCAGCGTGTTCTAAATCAAGTGCGTGCCACACCTGCAGCTCGCTTATTTTTCTTCATTCGATCAAATAGCTTGTGTTATTGTCGTTGCCGGTAAGAGCAGCTTTCAAATGAATGTCGAATTAAATTACATGATTGCGATTGCTACGCTAAGTGGTTGGCTTAGAAATATGACGCCAGTTTTTCAATCAATGAGAAGCAAAACCAAACCTCATCGGACCTTGTACATGCGATTTTTCCTGCGCTTTGTGTTTCGTGCGGGTTCGGAATGTAGAGAAAACCGAAGCTTAGACAAATACTGTAAACAGCACAGCTTTTAATGGCGACCGCGAGCTAAGTAAAATTACAAAAACAAGGTCACGTGATTTCAGAACGCGTGACCTATTAATCAAAGCATAACGTTACACTTTGAGCAAGTCACACGTAATTGCTTGGATTTCTGACTGAATGGTTTATCACGCAGTTTGCTTCCGTTGTGATTGGCCGG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00020	TNFR_c6	TNFR/NGFR cysteine-rich region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001368	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR052491	Family	Tumor necrosis factor receptor superfamily member 10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46330	TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 10B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05142	TNFRSF4, OX40, CD134; tumor necrosis factor receptor superfamily member 4	-	CD molecules	ko04090	deepkoala