Gene detail

Detailed information of Ahemp_030121-T1 in Acropora hemprichii

Genomic Location: scaffold_4:1676514...1684589
NR annotation: XP_029191111.2, enhancer of mRNA-decapping protein 4-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Ahemp_030121-T1

AGCAGATGTAAGCCCTAAGTAATTAATTTTGCATTGTATTGTACAGTGTAAAATTGTGAACTGTTATACTTTGCAATCAGATGGATAAGATTTCGCAGGATTCTGTAATTTTAATTTCTGCAGACAATAAGGTAAGCAATGGCGTAGAACGACCTGAAATGGAAGACGTAGATGAGTCAATAAGTGAAACAGCTTCTACAACAAGTTCACTCTCACCTATAAGAAGGGGAAAGATTGAACAAAGTTCTGATGTATCAACCTCTGATAGTGAAGGTGTTGCATCAAGAATGTCCCTTGAACCGGTGAAGCAAGTGCTTCAGATGACAGGTATAGATAATGAAGGCAGCAAATCTGTATATGGCAGTGATGTTGAAATTATCACTCATGACTCAGCATCATCAATAAGTGCTACAGCAAGTAGTAAGATCAAGTTTAATTCAATGGTAAATTATGACTGGGAACTCAAGTATTACAGAGGATGTCTTATCGCTGTTAGCAGCAAATGCATTGCTTATGCACTCAGAGGTCGTTTAGGTTATGTGGTGAGACTATTAGATCCTGAGACTGCTTCAAGGACTCTAATCAAGGGCTTTGCAGGCATGATCAGTGAGTTGGCGTTTTCACACAAAGATTCCAATACATTGGCATGTGTTGATGAAGGTGGTAATGTTTATGTTTGGGTCATCCAAGATGAAAATGGAAAACTTGAATACTCTATAAAACTTCACATTCAGCGTTCGACTGATGTACTATGTGAGCATCACAGACTGGTATGGACTCCTTATATGCCAGATGTTGAAGAAAATGCTGAGTCCTCAGCTGATGAAGGTCGTCCCTTGGCCATTACACATGGTAACCAGGTGGAGGTAATAGATATTGATTCATTGCTTGAATCATGTGGGAAATCAGAGGTCACTGTTGAAGATGTAAAACATGCAGAGGGATATTTAGAAATCAAAGATGGACACACTAAACCAATCACAGAGGGGGCTTTATGTCCTGATGGGTCAGTATTAGCAACAGCAAGTGAGGATGGTCTTATCAAGTTTTGGCAGTTGTCTGACAAGATTGAGTGCATGCACGAATTTCAACCTCATGGTGGCTCTCAGCTGTCTTGTATGATGTTTACCGATAGCCAAACTTCCCAGAATAAAGAGTAAGTGGGATCTGCTCTACAGTTTTTCTTCCCTACTTGCCTCCCCCCTTCCTTCTTGTTTCTTACTATAGCATGAACCCAGAATTTTAAAAATTACATGGAAGATGCCTGTGGGTATTTCTGTCTACAACTACTCATCATTTTCACTCTTATACCTTTATGGAATGTGTTTGTGAAATCACAGCTGTTTTTGATGACTGAGGTTTTCTCCATGGTTTGAAGAAGTCTTCATTGTCATAGTCAATTCTATCTCTCACTCAGTTAATTTGCAGTTTGACTTTGATTGGGGTCATCCACAAGTAGCTACATACTGCCATTGCCTTTGAATGTGTCTAGAAATGTGCAAAATAATACTGTAGGATGTTTTGGTCATTCCGGTGTTCCCTTTTGGCTTCTCTTCAGCTTCAATACCACATTTTCCTGATAATTATTATTTTCTACAGGTGTTAAACACCACAAGTAATGTTCCTCAAGCTTTGTGATGTTTAAATCACATTATGTCCATGCATCTCATTTTGTACATTCTTTGCCAATCAGTGGCTCAACCTTCCAATACAACCTCTTAGATGTATGGAGAATGTTAACCCTGGACAGGAAGTTTTTCTTTTTCTCCTTCGTTTTTTTCACTTGCTGGGAATTTTTCATTTTCAGTCTTCCCATGTGGAGATTTTTAATCACTGGAGCAGATCTCAATAGAGAAATAAAAATATGGTGTACAGTTACATGGTCTTGTCTTCAGACAATAAGGTATTGTCCTTTCTCTGACTACCTGTTTAATGGTAAAATGTTGCATAATTTTGTTTATGAATTTTATTGATGTTCTTTCAGATGTTTTATTTTATTTTTTTTGCCTGACGTGATCTCTCCAATATTTCTTACCCTTTGAGAGCATTAGTTAGGTAAAGTCCTGGCCCCAGTTGTTCAAACGATGGATAGCGCTGTCCACCGGATAAATCACTATCCAGCGGATAAACAATAGCAAAACCAATTGAGTTATCCAGTGGATAGTGATTTATCCAGTGGATACTTAGCACTATCCAGCGTTTGAACAACTGGAGCCTGGTCATTTCAACAGATGTTAGATGCGAAGACTAGGTGACCAGCAAAAAAGAATGTATGCTAAGAAAGTCTTTAAATCCGTGACTTAGGCATGATTTTTGTTTAGTTATTCAATAATTCATACTTTTGGTAAACAAGCTATCTCTTTT

Protein

Uniprot

Gene family

Uniprot term	Description
Q7ZXT3	Enhancer of mRNA-decapping protein 4 OS=Xenopus laevis OX=8355 GN=edc4 PE=2 SV=1
Q1LUT1	Enhancer of mRNA-decapping protein 4 OS=Danio rerio OX=7955 GN=edc4 PE=3 SV=1
Q6P2E9	Enhancer of mRNA-decapping protein 4 OS=Homo sapiens OX=9606 GN=EDC4 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16529	Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032401	Domain	Enhancer of mRNA-decapping protein 4, WD40 repeat region	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR045152	Family	Enhancer of mRNA-decapping protein 4-like	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15598	ENHANCER OF MRNA-DECAPPING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000932	Cellular Component	P-body	Interproscan
GO:0031087	Biological Process	deadenylation-independent decapping of nuclear-transcribed mRNA	Interproscan