Gene detail

Detailed information of Ahemp_030927-T1 in Acropora hemprichii

Genomic Location: scaffold_836:3824...7666
NR annotation: XP_044180415.1, tetratricopeptide repeat protein 28-like, partial [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Ahemp_030927-T1

aattgaaaattgcaaaagaaatcggtgatgggggtggagaagaaagaggaaatggaagtctcggtaattgttaccagttactgggtgactttcgaaAATCCATTGAGTACAATGAGAGAGGTTTAAAAATTGCAATAGAAATCGGTGATCGAGGTGGAGAAGGAACAGCGAGTGGAAATCTCGGTAATTGTTACCATTCACTGGGTGACTATCGAAAATCCATGGAGTACCATGAGAAACATTTGAAAATTGCAAAAGAAATCGGTGATCGAGGTGGAGAAGGAGGAGCATATGGAAATCTCGGTACTTGTTACCAGTCACTGAGTGACTATCGTAAATCTATTGAGTACCATGAGAAACATTTGAAAATAGCAAAAGAAATCGGTGATCGGGGTGGAGAAGGAAGAGCAAATGGAAGTCTCGGTAATTGTTACCAGTCACTGGGTGACTACCGAAAATCTATTGAGTACCATGAGAAAGATTTGAAAATTGCAAAAGAAATCGGTGATCGAGTTGGAGAAGGAGGAGCTTATGCAAATCTCGGTAGTTCTTACCATTCACTAGGTGACTATCGAAAATCCATCGAGTACCATGAGAAACATTTGAAAATTGCAAAAGAAATCGGTGATCGAGGTGGAGAAGGAGGAGCTCATGGAAATATTGGTACTTGTTACCAGTCACTGGGTGACCATCGAAAATCCATTGAGTACCATGAGAAACATTTGCAAATTGCAAAAGAAATTGGTGATCGGGGTGGAGAAGGAAGAGCAAATGGAAGTCTCGGTAATTGTTACCAGTCACTGGGTGACTATCGAAAATCGATTGAGTGCCATGAGAAACATTTGCAAATTGCAAAAGAAATCGGTGATCGAGGTGGAGAAGGAGCAGCCAATGGAAGTCTCGGTATTTGTTACCAGTCACTGGGTGACTATCGAAAATCCATTGACTACCATGAGAAACATTTGAAAATTGCAAAAGAAATCGGTGATCGGGGTGGAGAAGGAGCAGCCAATGGAAATCTCGGTAATTGTTACCAGTCACTGGGTGACTATCGAAAGTCCATTGAGTACGATGAGAAAGATTTGAGAATTGCAAAAGAAGTCGGTGATGCCCTTGGAGAAGGAGCAGCTTATGGAAATCTCGGTAATTGTTACAGGTCACTGGGTGACTATCGAAAGTCCATGGAGTACCATGAGAAACATTTGAAAATTGCAAAAGAAATCGGTGATCGGGGTGGAGAAGGAGCAGCCTATGGAAATCTCGGTAATTGTTACCAGTCACTGGGTGACTATCGAAAGTCCATGGAGTACCATGAGAAACATTTGAAAATTGCAAAAGAAATCGGTGATCGGGGTGGAGAAGGAAGAGCGAATGGAAATCTTGGCAATTCTTACCAGTCACTGGGTGACCCTCAAAAATCCATTGAGTACCATGAGAAACATTTGAAAATTGCAAAAGAAATCGGTGATCGGGGTGGAGAAGGAAGAGCAAATGGAAGTATCGGTAATTGTTACCAGTCACTGGGTGACTCTCGAAAATCCATTGAGTACCATGAGGAACATCTGAAAATTACAATAGAAATCGGTGATCGGCGTGGAGAAGGAGCAGCCTATGGAAGTTTCGGTAATTGTTACCGGTCACTGGGTGACTATCCAAACTCCATTGAGTACCATGAGAAACATTTAAAAATTGCAAAAGAAATCGGTGATCGAGGTGGAGAAGGAATAGCGAATGGAAATCTTGGCAATTCTTACCAGTCACTGAGTGACTGTCGAAAATCCATTGAGTACCATGAGAAACATTTGAAAATTGCAATAGAAATCGGTGATCGGCGTGGAGAAGGAGCAGCCTATGGAAATCTCGGTAATTGTTACCGGTCACTGGGAGACAATCGGAAATCCATTGAGTGCCATGAGAAACATTTGAAAATTGCAAAAGAAATCGGTGATCGGAGTGGAGAAGGAATAGCGAATGGTAATCTCGGCAATTGTTACCAGTCACTGGGTGACCCTCAAAAATCCATTGAGTACCATGAGAAACATTTGAAAACTGTAAAGGAAATCGGTGATCGGGGTGGAGAAGGAAGAGCGAATGCTAATCTTGGGTTGCTTACAGATCACAGCGTGATTCTCGAAAATGCATTGAGTATTATGAGAAACATTTGAAAATTGCAATCGAAATCAGTGATCGGCGTGGAGAAGGAGCAGCTTATGGAAATTTCGGCAATTGTTACCAGTCTCTGGTTGACTATCGAAAGTCCATTGAGTACCATAAGAAAGATTTGAAAATTGCAAAAGAAATCGGAGAACAGGGTGGAGAAGGAGGAGCGAATGGAAATCTCGGCAATTCTTACCAGTCACTGAGTGACTCTCGAAAATCCATTGAGTACCATGAGAAACATTTGAAAATTGCAATAGAAATCGGTGGTGGGCGTGAAGAAGAAGCAGTCTATGGAAATCTCGGTAATTAATTGTTACCAGTCACTGAGTGACTATCGAAAATCCATTGAGTACCATGAGAAACATTTGAAAATTGGAAAAGAAATCGGTGATCGGGGTGGAGAAGGAACAGCGAATGGAGGTCTCGGTAATTGATTCCAGTCACTGGGTGACTATTGAAGATCCATTGAGTACCATGAGAAACATTTGAAAATTGCAATAGAAATCGGTGATATGGGTGGAGAAGGAGCAACCTATGGAAATCTCGGTAATTGTTACCAGTCTCTGGGTGACTATCGAAAATCCATTGATTACCATGAGAAACATTTGAAAATTACAAAAAAAATCGGTGATTGGGGTGGAGAAGGAAGAGTGAATGGAAATCTTGATATTGCTTACAGGTCACAGCGTGACTATCAGAAATCCATTGAGTACCATGAGAAACGTTTGGAAATTGCAATAGAAATCGGCTATCGGGGTGGAGAAGGAAAAGCCTATGGAAATCTCGGTTATTCTTACCAGGGACTTGGTGACTATCAAAAAGCCATTGACTGTTGTGAAAAACTAGTAAAAATTGCATTAGAAATCGGTGATCGGCCTGGAGATGGAGGAGCCTATGGAAATCTCGGTGATGCTTACGAGTCACTGGGTGATCATCAAAAAGCCATTGAGTATCATAATAAACTATTGAAAATTGCAACAGAAATCGGTCATCGGGCCCGAGAAGGAATTGGTTATCGCGACATTGGAACTTTGATACTTATCCAAAAGTATTGATACTTATCCAAAATATATGACCTTTTCATTACTGTCAAAAATTTTTTTTAGGGGAAACATGATCAATTACTACTAATCTCAAAATTTTCGACCAAATGTGATTTATGTGACATCTTTTTACTCAAGTAGTAACAGGGTTAAACTATATGATTTTATTTTCTTAGATATTCAAGCCAAAGTTGATAATTATTACCATAAGCATCCCAAGCAAAAATATATTGCCAAAAGTGTTTTCAATATTACTTAATGTTACTCTTAACTCATACGATGATAAAGTGTTAAGGGCTCAGAACAATATTTGGAAGCAGTCTTTAAGCTTTTCCAGTTAACATTTGGGTGAGTGTACCAGTTTCCACCATTTCACTTAATAAAACCATTTGAGAAATTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13176	TPR_7	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR052699	Family	Regulatory & Mitotic Spindle Associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10098	RAPSYN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15837	GPSM2; G-protein signaling modulator 2	-	Cilium and associated proteins	ko03037	deepkoala