Gene detail

Detailed information of BRAKERFUXP00000002467.1 in Telmatactis stephensoni

Genomic Location: 001025F_pilon_pilon:33379...50001
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000002467

ATGTGGACTAAACCAGATGAAGTACTACTAGCTAATGCGTTATGGGTCACGGACAGAGCGAACCCTTATTTTGTACTTCAAAGACGAAAAGGACACGGAGGAGGTGGATTGACTTCACTGTTAATAGGAACTCTGGACAACGTTCTTGATTCAAAACCTCTCCCATTTCGCATTCTTCTGCAGCTACCAAATTCTGATGTCAGttatgTAATTTCACATGGAGCAACATTTAGAGAAATAGAATCAGACTGGGACTGGCTAACTAAGTACCTCCTGGAGACACTTACTAATATTGATAGTGAGGAAGATATCAGAGATTTTGTCAGGGCAAAGATTGAGAGCCTTGTGGCTAACGTAGAAGCTGATCATGAACCAGCAACAATTCAAGATAATGAAAGTGCAAAGTTCAAGTCTGCTACAAAAAGATTTCACAGGTTATTCAACCTACCAGAGAATGAAAAGCTTGTCAACTATTATTCCTGTAGTTACTGGAAAGGACGTGTTCCTCGTCAAGGCTGGTTGTACTTATCTGTCAATCATGTGTGCTTCTACTCATTTCTGATGGGAAAAGAAGCAAGACTTGTCATCCAGTGGACAGATGTTACTTCACTGGAGAGAACAAATAGTGTGCTTTTAGCTGATGGTATCAAGGTTTCTACTAGAGATGGAGAGttttgtttttcattactGATGCATCCTTCTGAAACCTTTGGACTGATGGAACAGTTAGCAAATCTGGCCATGAGACAgtTATTGTCTAATGAAGGATATGAGGAAACAGCTGCCTTGCCAGTGCTTACAAGGAAACATGATAAAGCTGCCATGAAGAAAATCCCAAATTTAAAGAGAGACCTTGATTCCAGAGCACAAAGTGAAAGCTACAGGAATCTATTTCGATTACCCATAGAAGAACGTCTAGATGGTCATTGTGAGTGCACAGTATGGAGTCCACACAATAAGGCTCATGTCTGGGGCACTTTGTACTGCTCACCAAACTTTTTGTGTTTTACCAGCAAGATACGCCAGTTACTCTCTGTTGTTATTCCTATGAGGGAGATCACTTTAGTAGAGAAAGTAGAAACTTCTGCCATGGTACCCAATGCACTTCATATAACTACTAAGTCTAAGGCaaatttcttgttttcttctctTGGTGACCGTGACTATTTGATGCAACTGATATCAGACTTCTTGGCCAAAACACCTGAACCAAGGGATGCTGGCAGTGGTGAGTGGGAATATGCTGCCAATGAAGAGAAACCACCAGTTAAAGATAAACCAGTCTTCCAACCACCACTGACTCAAGTGTTTGTTAACTCACCTTCTGATCAAATTACTGCCAAAGAGTCTGTTAAGGAACATCTGTGGAGGCTCCACTTGGCTGAGTATGGCAGGGGTGTGTGTATGTACCGTACTGTCAAAACACATGAACTGATTTTAAAGGGGATACCTGACAGCCATCGTGCTGAGATATGGTTAATATACTCTGGAGCTATCAATGAGATTGAGACACATCCAGGATACTATGCGTCCATGGTAGAACAGTGTCaaggcaaaacaacacttgctACAGAAGAGATAGAAAGGGACCTACATAGGTCCCTCCCAGAGCATCCTGCATTCCAATCAGATGTTGGTATAGGTGCATTAAGGCGAGTATTGACCGCCTATGCCTGGAGAAACCCTAGTATTGGGTATTGTCAAGCAATGAACATAGTGGCAtctgtgttgttgttgtactgCACTGAAGAGCAAGCCTTCTGGTTACTTGTCGCAGTGTGTGAACGTCTACTACCTGATTACTACAACACCAAGGTTGTTGGTGCTCTAGTTGACCAAGGAGTATTTGAAGACTTGACACGTGATCATCTTCCAGAGCTGTACGATCATCTCAAAGACCTGGGAATTTTGAATATGATTTCGTTGTCATGGTTCCTAACACTCTTCCTAAGTGTGATGCCATTCGCTTCAGCAGTCAATATCATGGATTGTTTCTTCTATGATGGAGTAAAGGTTCTTTTCCAAATCGCTTTAGCGACGCTTGAAGCCAACAAAACAGAGCTTTTGTCCGTAGAGGATGACGGGGAGGCCATGACCATATTAGGAGCTTACCTCGAGCACGTGACCAATAGAGACGCTAGTACCCAGGCTTTAACGATGACGGTTAATAATCGCAGCATTGGTGTACCTTGCCCTGAGTATTCCTCATCTGTAGACGTTTCTAACCTTATACTGGAGTCGTACCAAAAGTTTGGATTTATCACAGCAGAACATATAGAATCGATGAGAAATATTCAAAGACTTAAAGTGGTTCAGGGACTTGAAGACAGCATGCGACGTAATGTCGTACGGACGATAGGAGCTGAAAGCTCTGTTTTTAGTCAACAGGAACTTGAACAAATGTACGCTGTGTTCAAGGTCAGCCACTTACAGACTCGTAGTAGAGGAAGTCTGGAAATACGCGATTCAAGTCAACAGTGGCAACATTTACAAAGCATTGATGTGGAAGGATTTAAACCTTTCTTTGTGAGCTTGACAGACTGGGGTACCTGCGAGATCAGTGATTTGTTGGCTCGTAGAGCTTTTAAGGTGATTACACAAGGCAAAAGCGATTTTATCACTTTTAAAGAACTAGTTGATACCCTGGGTAGAATATGCAAAGGGGATTTACACGATAGGTTACAATTCATCTACTCTATGCACGTGGAGCCTGCGATAACAGAAAGTCTGGAGTCGTTCTGTGAGACCGGAGAAGAAGTGAAGGAGGCCAGTGTTGAAGAATCTGGTGAAGAAGGTGCAAGTAGTTCTTGCAAGGAAGATCAGAAGGACGATGAGACGCCACTGAGCTCAAGTGCAAAAAGCAAAGAGAGTCTGAAAATTCAAGAGATGTTGCAGCAGGATGATGCACCAATGGGTCAGCTTCCAATGATGACCCAGGAACAATTTATTCACCTATGGAAAACTCTGTATTCGCTGTTTCGTGAACTACCAAATGAACAACAGATGTACCAAGCGATAGCAACAGTTGGTAACATACTTCTAAAGTTAGGTGAGTTTGGCACAGAGTATGGGGCATCAGTTCCTATAGATCTTCCCCAAGATAACATAGCCAATAGCTTGGACTCCGAAAAATCTTCGGAAAGCCCAATCCTACCCGAGGGTGTCACGACGTCCTCCGAACTTGCGTCGTCAGCTTTGCTGAAGGAGGTTTTAGCAGACGCTGCTCGGAGTAGCGAATCTTCATTGAGTAGTCCCGTACGAAGTACTATTGGTGATGATTATGTGCTTGTACCGAGTGATGATGGCTTCAGTAGTCCAGAACACATCGATCCAGACAAAAACGGAGCTCCAGAAACTTTATCGAGTTTATATTTGAAATTGGAAAACTCCCAACTGGTTTCGCCCAATCCAGAGGAAGAGTCTGACAGTGCCGATCTTAGAACTCCAACAGCTGAATGTAACGAAGCGGGTTACCCGAGGGATTTTACACAAGTGGAAACTGACTCGGATGAGAGACCATCTTCCGGTATGctggattctgattggtcaatatcATTCGAGCAGTTTCTGGCATCGATGTTGACTGAGCCCTACGTGGTACATTACTTTGAACAGCAAATCGATGTGTTGGACAGACTTAAACGTTTAAAAACTGAAGGATTAACTAGTTTTAAAAGCGCTGCTAATTTACTAGAAGAGGAATAA

Transcript

BRAKERFUXT00000002467

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00566 all species →	RabGAP-TBC	Rab-GTPase-TBC domain	Family	Interproscan
PF02893 all species →	GRAM	GRAM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000195 all species →	Domain	Rab-GAP-TBC domain	Interproscan
IPR004182 all species →	Domain	GRAM domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR035969 all species →	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan
IPR036017 all species →	Domain	TCB1D9/TCB1D9B, PH-GRAM domain 2	Interproscan
IPR036014 all species →	Domain	TCB1D9/TCB1D9B, PH-GRAM domain 1	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47666 all species →	PROTEIN VASCULAR ASSOCIATED DEATH 1, CHLOROPLASTIC	Interproscan

Gene Ontology

No Gene Ontology signature was detected for BRAKERFUXP00000002467.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19951	TBC1D8_9; TBC1 domain family member 8/9	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000002467.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

17TPM > 0

6Conditions

70.5Max TPM

19.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	2	0.95	2.45
Club-tips	3	3	51.04	70.51
Actinopharynx	3	3	0.96	1.92
Tentacles	3	3	58.36	63.30
Pedal disc	3	3	2.08	3.40
Body column	3	3	3.39	9.06

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	2.45
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.41
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	70.51
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	48.40
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	34.19
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	1.92
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.68
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.28
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	63.30
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	56.92
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	54.85
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	3.40
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	2.15
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.69
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	9.06
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	0.68
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	0.44

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.