Genomic Location: 000624F_pilon_pilon:96869...100787
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families
| CDS |
| BRAKERFUXT00000010513 |
| Transcript |
| BRAKERFUXT00000010513 |
| Protein |
| BRAKERFUXP00000010513.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002516 (this species only) · gene tree & orthology |
| Ubiquitin family | E3|E3 activity|RBR · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01485 all species → | IBR | IBR domain, a half RING-finger domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR031127 all species → | Family | E3 ubiquitin ligase RBR family | Interproscan |
| IPR003977 all species → | Family | E3 ubiquitin-protein ligase parkin | Interproscan |
| IPR044066 all species → | Domain | TRIAD supradomain | Interproscan |
| IPR047536 all species → | Domain | E3 ubiquitin-protein ligase parkin, Rcat domain | Interproscan |
| IPR002867 all species → | Domain | IBR domain | Interproscan |
| IPR047534 all species → | Domain | E3 ubiquitin-protein ligase parkin, BRcat domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11685 all species → | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000151 all species → | Cellular Component | ubiquitin ligase complex | Interproscan |
| GO:0000209 all species → | Biological Process | protein polyubiquitination | Interproscan |
| GO:0000422 all species → | Biological Process | autophagy of mitochondrion | Interproscan |
| GO:0001933 all species → | Biological Process | negative regulation of protein phosphorylation | Interproscan |
| GO:0004842 all species → | Molecular Function | ubiquitin-protein transferase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005783 all species → | Cellular Component | endoplasmic reticulum | Interproscan |
| GO:0005794 all species → | Cellular Component | Golgi apparatus | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006511 all species → | Biological Process | ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0010821 all species → | Biological Process | regulation of mitochondrion organization | Interproscan |
| GO:0016567 all species → | Biological Process | protein ubiquitination | Interproscan |
| GO:0031624 all species → | Molecular Function | ubiquitin conjugating enzyme binding | Interproscan |
| GO:0032436 all species → | Biological Process | positive regulation of proteasomal ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0042981 all species → | Biological Process | regulation of apoptotic process | Interproscan |
| GO:0061630 all species → | Molecular Function | ubiquitin protein ligase activity | Interproscan |
| GO:1900407 all species → | Biological Process | regulation of cellular response to oxidative stress | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
BRAKERFUXP00000010513.1.Transcript abundance of BRAKERFUXP00000010513.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Mesentery | 3 | 3 | 5.05 | 5.73 | |
| Club-tips | 3 | 3 | 0.89 | 1.12 | |
| Actinopharynx | 3 | 3 | 1.05 | 2.04 | |
| Tentacles | 3 | 3 | 1.16 | 1.44 | |
| Pedal disc | 3 | 3 | 1.89 | 2.51 | |
| Body column | 3 | 3 | 1.64 | 2.70 |
| SRA run | Condition | Tissue | Developmental stage | Treatment | Study | TPM |
|---|---|---|---|---|---|---|
| SRR14511800 | Mesentery | Mesentery | not recorded | not recorded | SRP319504 | 5.73 |
| SRR14511804 | Mesentery | Mesentery | not recorded | not recorded | SRP319504 | 4.85 |
| SRR14511801 | Mesentery | Mesentery | not recorded | not recorded | SRP319504 | 4.58 |
| SRR14511802 | Club-tips | Club-tips | not recorded | not recorded | SRP319504 | 1.12 |
| SRR14511811 | Club-tips | Club-tips | not recorded | not recorded | SRP319504 | 0.82 |
| SRR14511803 | Club-tips | Club-tips | not recorded | not recorded | SRP319504 | 0.73 |
| SRR14511805 | Actinopharynx | Actinopharynx | not recorded | not recorded | SRP319504 | 2.04 |
| SRR14511806 | Actinopharynx | Actinopharynx | not recorded | not recorded | SRP319504 | 0.78 |
| SRR14511807 | Actinopharynx | Actinopharynx | not recorded | not recorded | SRP319504 | 0.33 |
| SRR14511808 | Tentacles | Tentacles | not recorded | not recorded | SRP319504 | 1.44 |
| SRR14511809 | Tentacles | Tentacles | not recorded | not recorded | SRP319504 | 1.22 |
| SRR14511810 | Tentacles | Tentacles | not recorded | not recorded | SRP319504 | 0.81 |
| SRR14511812 | Pedal disc | Pedal disc | not recorded | not recorded | SRP319504 | 2.51 |
| SRR14511813 | Pedal disc | Pedal disc | not recorded | not recorded | SRP319504 | 1.69 |
| SRR14511814 | Pedal disc | Pedal disc | not recorded | not recorded | SRP319504 | 1.47 |
| SRR14511817 | Body column | Body column | not recorded | not recorded | SRP319504 | 2.70 |
| SRR14511816 | Body column | Body column | not recorded | not recorded | SRP319504 | 1.32 |
| SRR14511815 | Body column | Body column | not recorded | not recorded | SRP319504 | 0.91 |
Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM,
StringTie quantification over 18 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
Genes whose expression across the transcriptome samples of Telmatactis stephensoni tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
| Direction | Partners | Most correlated partner | PCC |
|---|---|---|---|
| Positively correlated | 0 | not in this network | - |
| Negatively correlated | 5 | BRAKERFUXP00000049833.1 | -0.754869810818796 |
Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.
Whether this gene can be visualised in the single-cell atlases of Telmatactis stephensoni, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | ready | open → |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
