Genomic Location: 000520F_pilon_pilon:95182...101782
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families
| CDS |
| BRAKERFUXT00000012302 |
| Transcript |
| BRAKERFUXT00000012302 |
| Protein |
| BRAKERFUXP00000012302.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006397 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00514 all species → | Arm | Armadillo/beta-catenin-like repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000225 all species → | Repeat | Armadillo | Interproscan |
| IPR013284 all species → | Family | Beta-catenin | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45976 all species → | ARMADILLO SEGMENT POLARITY PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0003713 all species → | Molecular Function | transcription coactivator activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005912 all species → | Cellular Component | adherens junction | Interproscan |
| GO:0007155 all species → | Biological Process | cell adhesion | Interproscan |
| GO:0016342 all species → | Cellular Component | catenin complex | Interproscan |
| GO:0019903 all species → | Molecular Function | protein phosphatase binding | Interproscan |
| GO:0035257 all species → | Molecular Function | nuclear receptor binding | Interproscan |
| GO:0045294 all species → | Molecular Function | alpha-catenin binding | Interproscan |
| GO:0045296 all species → | Molecular Function | cadherin binding | Interproscan |
| GO:0045944 all species → | Biological Process | positive regulation of transcription by RNA polymerase II | Interproscan |
| GO:0060070 all species → | Biological Process | canonical Wnt signaling pathway | Interproscan |
| GO:0098609 all species → | Biological Process | cell-cell adhesion | Interproscan |
| GO:0140297 all species → | Molecular Function | DNA-binding transcription factor binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02105 | CTNNB1; catenin beta 1 | - | Cushing syndrome | ko04934 | deepkoala |
Transcript abundance of BRAKERFUXP00000012302.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Mesentery | 3 | 2 | 4.22 | 7.71 | |
| Club-tips | 3 | 3 | 4.01 | 4.80 | |
| Actinopharynx | 3 | 3 | 3.44 | 5.64 | |
| Tentacles | 3 | 3 | 2.25 | 2.58 | |
| Pedal disc | 3 | 3 | 1.71 | 2.52 | |
| Body column | 3 | 3 | 1.00 | 2.01 |
| SRA run | Condition | Tissue | Developmental stage | Treatment | Study | TPM |
|---|---|---|---|---|---|---|
| SRR14511801 | Mesentery | Mesentery | not recorded | not recorded | SRP319504 | 7.71 |
| SRR14511800 | Mesentery | Mesentery | not recorded | not recorded | SRP319504 | 4.94 |
| SRR14511804 | Mesentery | Mesentery | not recorded | not recorded | SRP319504 | 0.00 |
| SRR14511803 | Club-tips | Club-tips | not recorded | not recorded | SRP319504 | 4.80 |
| SRR14511811 | Club-tips | Club-tips | not recorded | not recorded | SRP319504 | 4.42 |
| SRR14511802 | Club-tips | Club-tips | not recorded | not recorded | SRP319504 | 2.83 |
| SRR14511805 | Actinopharynx | Actinopharynx | not recorded | not recorded | SRP319504 | 5.64 |
| SRR14511806 | Actinopharynx | Actinopharynx | not recorded | not recorded | SRP319504 | 3.07 |
| SRR14511807 | Actinopharynx | Actinopharynx | not recorded | not recorded | SRP319504 | 1.59 |
| SRR14511810 | Tentacles | Tentacles | not recorded | not recorded | SRP319504 | 2.58 |
| SRR14511809 | Tentacles | Tentacles | not recorded | not recorded | SRP319504 | 2.11 |
| SRR14511808 | Tentacles | Tentacles | not recorded | not recorded | SRP319504 | 2.06 |
| SRR14511813 | Pedal disc | Pedal disc | not recorded | not recorded | SRP319504 | 2.52 |
| SRR14511814 | Pedal disc | Pedal disc | not recorded | not recorded | SRP319504 | 1.52 |
| SRR14511812 | Pedal disc | Pedal disc | not recorded | not recorded | SRP319504 | 1.08 |
| SRR14511815 | Body column | Body column | not recorded | not recorded | SRP319504 | 2.01 |
| SRR14511816 | Body column | Body column | not recorded | not recorded | SRP319504 | 0.57 |
| SRR14511817 | Body column | Body column | not recorded | not recorded | SRP319504 | 0.41 |
Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM,
StringTie quantification over 18 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
Genes whose expression across the transcriptome samples of Telmatactis stephensoni tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
| Direction | Partners | Most correlated partner | PCC |
|---|---|---|---|
| Positively correlated | 1 | BRAKERFUXP00000011312.1 | 0.973747013155772 |
| Negatively correlated | 16 | BRAKERFUXP00000047270.1 | -0.734087755968496 |
Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.
Whether this gene can be visualised in the single-cell atlases of Telmatactis stephensoni, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | ready | open → |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
