Gene detail

Detailed information of BRAKERFUXP00000012335.1 in Telmatactis stephensoni

Genomic Location: 000532F_pilon_pilon:253784...258322
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05739 all species →	SNARE	SNARE domain	Family	Interproscan
PF11416 all species →	Syntaxin-5_N	Syntaxin-5 N-terminal, Sly1p-binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000727 all species →	Domain	Target SNARE coiled-coil homology domain	Interproscan
IPR010989 all species →	Homologous_superfamily	SNARE	Interproscan
IPR045242 all species →	Family	Syntaxin	Interproscan
IPR006012 all species →	Conserved_site	Syntaxin/epimorphin, conserved site	Interproscan
IPR021538 all species →	Domain	Syntaxin-5, N-terminal, Sly1p-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19957 all species →	SYNTAXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0005484 all species →	Molecular Function	SNAP receptor activity	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006906 all species →	Biological Process	vesicle fusion	Interproscan
GO:0012505 all species →	Cellular Component	endomembrane system	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0031201 all species →	Cellular Component	SNARE complex	Interproscan
GO:0048278 all species →	Biological Process	vesicle docking	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08490	STX5; syntaxin 5	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000012335.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

18TPM > 0

6Conditions

1.2Max TPM

0.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	3	0.57	1.11
Club-tips	3	3	0.73	1.19
Actinopharynx	3	3	0.43	0.61
Tentacles	3	3	0.48	0.51
Pedal disc	3	3	0.47	0.69
Body column	3	3	0.37	0.49

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	1.11
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.35
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.26
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	1.19
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.76
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.24
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.61
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.52
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.18
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.51
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.46
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.45
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.69
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.46
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.25
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	0.49
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	0.36
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	0.26

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.