Gene detail

Detailed information of BRAKERFUXP00000013489.1 in Telmatactis stephensoni

Genomic Location: 000465F_pilon_pilon:232659...247543
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000013489

atGGACGAAGAAGAAGGGAAAGCTGCAGATCGAAGTTCGATTGTGAAAGAGCGCTTCAGACGAGCGGCGCGGAAAGTGAAGAACTATTGGATCTTCACGCGAAGGTCAAGTTTTGAAGGCTTCTTCACATCTAAAGGTTCAGCATTTGCATTACCTGATGGAGATTTTGCAAGGAAAGCATCCAAGCATGGAGGGGAAATGCAAATGCATCTTCAGTCGATGGTTAATCTTTTACGAGACGATGATATCTTACGACTGGTTGTAAAACTTGAAGGTGCCTCTAAAGACAGGGTTCGTTATCTAACCGTGGTATCAGCATTCAATGACGATGACATTGAAGAAAGTATTGCTATGGGTATTGACTGGGTTAATAAAAGAGCAACTTGTACAATTGGTTTAGTGCTACCATTATGGAGAGATACAAAAATTGAACTAGATGGTGATGGaggTTTTAAACTTTCAACAAATTATAGAAGACATATTTTGAAACCTGTTTCTGTTCAAACAATGTGGACTGCAGTTCAATGGATTCATCGATGCTCagaaaatgcaagaaaaaacAACCATTTCCCTAATGGTCTCTCACATCAGTGGTCCAATTTTTATTCCAGTCATATATCATCTGACCAGCAGTGTATAAATGAATGGTATGAGATGGAAGATGTAAGTTCAAAGCTTATTCAACTTCCTGATGGTACAACTCCAGAACAAGAATTGATGATGAAACTAATACGACACAAGTTAAAAGAAGTAATGCTAAAAGTAGACTTAGAGGAAGTCACCAGTAGAATGATTCGCCAAAATCTTGAAGATGAAATGCAAATGGAATTAAAAGAATACAAGCAATATATTGATGAAGAAATGTTGACTATATTGGGACAAATGGATTCTGCATCACAAATCTATGATCATGTTTATTTGGGGTCAGAATGGAATGCATCAAATCTAGAAGAACTTAGGGAAAATGGGATTggttatatattaaatatatcgAGAGAAATAGACAATTTCTTTTATGGGACTTTTGAATATTTAAATATCAGAGTTTATGATGAGGAAGATTCAGAGTTATTACCTCACTGGAATAAAACACACAAGTTCATGAATGAAGCAAAAGAAAAGGGGGTCAAAGTCTTAGTACATTGTAAAATGGGTATGAGTAGATCAGCGTCAACGGTGATTGCCTATGGAATGAAGGAGTATGGCACTTCATTAAATGAAACAATGAAGCACGTCAAAGCTAAGCGATCCGTCATCAACCCAAACCCTGGTTTTTGGAAGCAGCTAATTACTTATGAAGGGATTCTGAATTCGAGTAAACAGAGATATAATGCATTATTCACTGGCTCTGGTCGACGACGAACAAATTCCGCAGACGACTTGAATGGTAGAAAAGGAAAACGACGGCGTAATCGTCGGGAAAAAAAGTCCAAAACTGTGACAATTGGAGAGAAGCTCTACACAGAGCCTGTAGTCGAAGAAGCTCACGCTAGTACTTTAGAACGAGGTTTGCTTATTGTTGGGGAAAATGAAGAAGATGATCCTTTTCAAGAACTCGATACTAGCCAACCTGCCctagaattttatttatcttcTGAGGAAGTTTTACGGACTTGGGAAAAATCGTTATCGGAAAGTGCCGAAGGCAGTCCGAGTAACTCCCGACCAACTAGTCCCGAACATGGTATTGATGAAGTAGACGACACGGTTGGGGTGCTTGAGCAGCCcaaaagtaaagtaaacaaAGTGCCGTCATTACATCGTGCTCGGTCTGTTCCCCTATTGCCTATTGGTGAAAGTATTACATCACCTGAAGAGGATAGTACGGACACAGACTCTAGAGAAGAACTTCATCGATGCACTTCTCTGCATGAGTTTCTCAGTGGTAAAGTACAAAAACTCAAGGAGGACTTTAGAGTTCATACTATGGGCAGCCAATCGGGTTCTCTTGGGACACTGGAGAGAAAAAGTGCTAGTCACCCTACTTCTCCTGTTGGGGAATTGAACCAAGAAAATGCGGACGATACAGTTATTAAGATAAAACTACAAAGCACTCTCAGCGACCCCACAAGTAGCGTCACGTCTCAACAAGTAGCGTCAAGTACGACTTCAGAGATTGAAAAAGGATCAGATGCACAAGAAACAGAGAAAATGGACGCCGGGAGTGTTCCAGATCAGACCCATAGTGTTGTCCACCGTGATGCTCAGGGTGTGGTCAAGAGTGGGACCGTCAAACGACAGTCTAGAAACTTTGAAGAAGGTAGAGTAAACCTTCCCTGGGAATGGGAAGAAGCTTTAGAAGTTTTGGAGAAAAATGAAGATGCTCCAGTGAAAGAAATCGCTGTAGAGTCGGAATCATCGAATTTGGAGGAATTGCCGCGTCCTGCAGCTGAGGATGAGCCGCCTGTTGGTTTGGTTAAAATGCATGCACAAAAATTCCAAGGCAAATTCGAGGGAGATGGAAAAGATGTCGATACTGAACAAGATATCGACATTACCAAGAAAGATCAAGAATTTGATAAGGAAGCAAAGAATCTTGTTACTGAGGGTGACCGTGCAAAAGAGGAAACCCAAAAACCTAGAGAACTGTTTGAAAAAGAAGTACAAAAAGTTAATGAGGACATGATGAAAGAAAAATCTAGCAGGAGAACTAGCACAAAAAGGAAGAGTGTAGATGATATTGACGAAGCAATTAATTCTACTCCAATTGATATCCAAAAATCTGAAAGTGTTTGTGAAGAAAATGTGCCAGAGGAGAGTTCCCAAGGTGAAGACCCTCTACCAGGAACTGTAAAGAAGCATACTCAAGCAATCGAATGTAAATATCAAAAACTTACGGTAGATACCACTGAAGACGTCACAAGCAAAAAGGTGGATTCTGAGAATGTTACTGACACTCTTTCGCCGAAGGTTTATCGAATAGAACTTAAACTAGCCGAACGAGAACCTTCTACAAGCCAAGCAACTGACCCAAATGAAAACGATGGCTTTGATGTAGATGTATTACTCCGAAGGGTAAACGAGGATTTGCAAAGAGAACGTGAACAACATCGAGCTAACGAGGGTTTCAAGGACTACGGTGGGTTTTCTCTTGAGGAAAGTATGTTCATGGATATTGAGCCAGAATCAGAGAATACAGATTTACTACGAGagcaagatgatgatgaaagcGAAATCCCTAGACCAGGAATTGTGAAGAGAAACACAGAAATATTACTTGGAAAAGGGAAAATCACTCAGGAAAACGTGGATAAAAAGATCTCTACAAAGGATGATGACTCTACTGTAACAATGACTGCAGCAGTAAATGAACGAAGTCCAGAGGCCAAAGTCCTATCACGTAAAAACACACTTCAAGGAGAGAAGGACGAAGAGACGGTTAAGCCAAATAGTGAGAGTGACAGTCCTTCAGGAAAAGGACTAGTCAAGCGCCATACTCTTGTCTATGAAGGCGTTATACCTTTTCCCTTGGATGGTGAATCCGCCGAGGAGTCAGAGAGCAAGGATGAGGAACCGGACGTTGAAAGAAAAATGTGTGAAGAAGATTCAAAGATTAAGGAGTTAGAATCAAGTGGGGAATCGTCTGCTGGGACTGTCAAGAGAAATACGTTGATATTTGAAGTCAAGCAGGATAAGCAAATAGAACTTGGTGATTCTGAGCGAGAAGAGGAACCCCAAAATCAAGAAGACGCCGCACAAGATTCTGTAGATACCTCTAGTGTTGTCAAAGTAAAACTGCGGCTACAACTTCTTGAGGAAGTTATTCGTGAAGCAAACTTACGTGAAAACCACAAACAACGAACAACCAAAGCACTCGCTGATTtagaagacaaaagaaaagaaattgaaatgaaacaaaacaaattagaCATTGAGAGTAACGCACAAAAACAAATCGATGTTTCTTCGTCCCTTGCCGAAGATCTCCCGACTGAGCCGGAAGTGACGCCAATAACCTCAAATCAAGAAAGTTCAGAGGAAACCGAAGTGCAAGCCGAGCATGCGCAGGAACCCGAGTCTCCAACCAAAGACAGTCCAGACAACGAGGTAACTCCTTGCGTTGGAAATGTAAGACTAAGGACTCTACAATTAGAAGAACGCATCCAGGTCGGGCAAGGGGCTGGGAAGTCTGGAGCATCTGTCCGAAGGCACGGATCCATGCCGAGAACTACTCGACCCATCGATCGTCCTGTTCTTCGGCAAAGATCAATGTCCGACCTTGAAGTTAGAAGGAATCCATCGACTTCTGGAGCCTCGCTCGCATCAAGTAGTCCTCTAGTTTGTGACATGCCGACAGATAAGAATAGAAAGTCTGAAACGGAAGAGTCGCGCTCAAAAGACGAAACCCCCGACAACGATCGGGATTCCGAGAAACTCAGCGATGACACATCGGAAAAATCCGACAAAACTGAAGATGATTTGACGACGAAGTCGTCGGATATTTTTGAACTTGGAGACCAAAAAGAAATAGAACAGGTTCTCGATAAAAATAACAAAGATATACAGACTTGA

Transcript

BRAKERFUXT00000013489

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08766 all species →	DEK_C	DEK C terminal domain	Domain	Interproscan
PF00782 all species →	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR020422 all species →	Domain	Dual specificity protein phosphatase domain	Interproscan
IPR014876 all species →	Domain	DEK, C-terminal	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR000340 all species →	Domain	Dual specificity phosphatase, catalytic domain	Interproscan
IPR043587 all species →	Family	Protein phosphatase Slingshot-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45864 all species →	SLINGSHOT PROTEIN PHOSPHATASE HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0004721 all species →	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030837 all species →	Biological Process	negative regulation of actin filament polymerization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05766	SSH; protein phosphatase slingshot	EC:3.1.3.16 EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000013489.1 across 18 RNA-seq samples of Telmatactis stephensoni. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

0TPM > 0

6Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Mesentery	3	0	0.00	0.00
Club-tips	3	0	0.00	0.00
Actinopharynx	3	0	0.00	0.00
Tentacles	3	0	0.00	0.00
Pedal disc	3	0	0.00	0.00
Body column	3	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.