Gene detail

Detailed information of BRAKERFUXP00000014167.1 in Telmatactis stephensoni

Genomic Location: 000480F_pilon_pilon:214653...220473
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Ubiquitin family	ULD\|UFD\|RAWUL · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16207 all species →	RAWUL	RAWUL domain RING finger- and WD40-associated ubiquitin-like	Domain	Interproscan
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042741 all species →	Domain	RING1 , RING finger, HC subclass	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR043540 all species →	Family	E3 ubiquitin-protein ligase RING1/RING2	Interproscan
IPR032443 all species →	Domain	RAWUL domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46076 all species →	E3 UBIQUITIN-PROTEIN LIGASE RING1 / RING 2 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0031519 all species →	Cellular Component	PcG protein complex	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10695	RNF1_2; E3 ubiquitin-protein ligase RNF1/2	EC:2.3.2.27	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000014167.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

17TPM > 0

6Conditions

7.8Max TPM

1.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	3	4.19	7.79
Club-tips	3	2	0.18	0.31
Actinopharynx	3	3	2.27	2.76
Tentacles	3	3	0.35	0.47
Pedal disc	3	3	0.25	0.40
Body column	3	3	0.63	1.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	7.79
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	3.64
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	1.15
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.31
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.23
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	2.76
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	2.13
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	1.91
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.47
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.31
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.25
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.40
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.21
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.14
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	1.01
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	0.46
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	0.41

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.