Gene detail

Detailed information of BRAKERFUXP00000014404.1 in Telmatactis stephensoni

Genomic Location: 000466F_pilon_pilon:287639...292187
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04427 all species →	Brix	Brix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007109 all species →	Domain	Brix domain	Interproscan
IPR039770 all species →	Family	Ribosome biogenesis protein Rpf2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12728 all species →	BRIX DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0000463 all species →	Biological Process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000470 all species →	Biological Process	maturation of LSU-rRNA	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14847	RPF2; ribosome production factor 2	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000014404.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

18TPM > 0

6Conditions

35.1Max TPM

18.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	3	19.84	27.64
Club-tips	3	3	23.42	35.11
Actinopharynx	3	3	12.06	18.92
Tentacles	3	3	23.26	33.64
Pedal disc	3	3	14.54	19.89
Body column	3	3	15.86	16.76

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	27.64
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	18.64
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	13.23
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	35.11
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	21.88
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	13.28
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	18.92
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	9.73
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	7.53
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	33.64
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	19.83
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	16.31
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	19.89
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	12.47
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	11.25
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	16.76
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	15.89
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	14.94

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.