Gene detail

Detailed information of BRAKERFUXP00000016167.1 in Telmatactis stephensoni

Genomic Location: 000445F_pilon_pilon:256536...268630
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17916 all species →	LID	LIM interaction domain (LID)	Domain	Interproscan
PF01803 all species →	LIM_bind	LIM-domain binding protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041363 all species →	Domain	LIM interaction domain	Interproscan
IPR029005 all species →	Family	LIM-domain binding protein/SEUSS	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10378 all species →	LIM DOMAIN-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0007399 all species →	Biological Process	nervous system development	Interproscan
GO:0030274 all species →	Molecular Function	LIM domain binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24143	LDB2; LIM domain-binding protein 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000016167.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

18TPM > 0

6Conditions

23.4Max TPM

9.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	3	11.32	13.85
Club-tips	3	3	4.97	6.56
Actinopharynx	3	3	10.35	17.15
Tentacles	3	3	7.80	10.12
Pedal disc	3	3	17.94	23.45
Body column	3	3	5.76	7.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	13.85
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	11.87
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	8.23
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	6.56
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	5.29
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	3.04
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	17.15
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	8.28
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	5.63
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	10.12
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	9.07
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	4.21
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	23.45
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	18.53
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	11.85
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	7.00
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	6.03
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	4.27

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.