Gene detail

Detailed information of BRAKERFUXP00000022131.1 in Telmatactis stephensoni

Genomic Location: 000301F_pilon_pilon:303845...313965
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04065 all species →	Not3	Not1 N-terminal domain, CCR4-Not complex component	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007207 all species →	Domain	CCR4-Not complex component, Not N-terminal domain	Interproscan
IPR040168 all species →	Family	Not2/Not3/Not5	Interproscan
IPR012270 all species →	Family	CCR4-NOT complex, subunit 3/ 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23326 all species →	CCR4 NOT-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000289 all species →	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0030015 all species →	Cellular Component	CCR4-NOT core complex	Interproscan
GO:2000036 all species →	Biological Process	regulation of stem cell population maintenance	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERFUXP00000022131.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000022131.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

18TPM > 0

6Conditions

18.7Max TPM

9.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	3	8.96	12.44
Club-tips	3	3	12.62	18.67
Actinopharynx	3	3	9.82	15.38
Tentacles	3	3	13.22	15.81
Pedal disc	3	3	6.66	7.11
Body column	3	3	7.99	9.71

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	12.44
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	8.14
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	6.29
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	18.67
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	10.14
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	9.06
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	15.38
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	9.03
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	5.04
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	15.81
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	12.69
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	11.16
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	7.11
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	6.58
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	6.29
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	9.71
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	8.40
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	5.85

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.