Detailed information of BRAKERFUXP00000023930.1 in Telmatactis stephensoni

Genomic Location: 000280F_pilon_pilon:316943...347183
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Ubiquitin familyUBD|Other|SH3 · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00435
all species →
SpectrinSpectrin repeatDomainInterproscan
PF08726
all species →
EFhand_Ca_insenCa2+ insensitive EF handDomainInterproscan
PF13499
all species →
EF-hand_7EF-hand domain pairDomainInterproscan
PF00018
all species →
SH3_1SH3 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018159
all species →
RepeatSpectrin/alpha-actininInterproscan
IPR018247
all species →
Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR002048
all species →
DomainEF-hand domainInterproscan
IPR002017
all species →
RepeatSpectrin repeatInterproscan
IPR014837
all species →
DomainEF-hand, Ca insensitiveInterproscan
IPR001452
all species →
DomainSH3 domainInterproscan
IPR011992
all species →
Homologous_superfamilyEF-hand domain pairInterproscan
IPR035825
all species →
DomainAlpha Spectrin, SH3 domainInterproscan
IPR036028
all species →
Homologous_superfamilySH3-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11915
all species →
SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →
Molecular Functioncalcium ion bindingInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0030036
all species →
Biological Processactin cytoskeleton organizationInterproscan
GO:0030054
all species →
Cellular Componentcell junctionInterproscan
GO:0030864
all species →
Cellular Componentcortical actin cytoskeletonInterproscan
GO:0042995
all species →
Cellular Componentcell projectionInterproscan
GO:0051015
all species →
Molecular Functionactin filament bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K06114SPTAN; spectrin alpha, non-erythrocytic (fodrin)-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000023930.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples
18TPM > 0
6Conditions
8.5Max TPM
4.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
Mesentery 3 3 5.64 7.84
Club-tips 3 3 5.24 6.92
Actinopharynx 3 3 4.89 8.50
Tentacles 3 3 4.98 5.65
Pedal disc 3 3 4.22 5.41
Body column 3 3 3.32 3.62

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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