Gene detail

Detailed information of BRAKERFUXP00000023933.1 in Telmatactis stephensoni

Genomic Location: 000280F_pilon_pilon:151159...166542
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000023933

ATGAATTTTGCTCGGATTGGCGCACGTTTCTTTACTAGTAATCGCCGGAAGGTTATGTCACGACGATCAAGCGTGTACGAACTCTCACGAAGTTCGGATTCAATGGATCTGTCTGTATCTGGCAAGGTCAGTGTTCGTGCAATCCATCCAAGTATTCTACACAAACAGTTTTGCTTCCAAGTGATTTCACCCAATGAAGTCAAATACTTCTCGTGCCGTAGTGCTGATGAACTCAATAAATGGATCAACAGCATTAAGAAGTCTATTCAGCCAACGCGTGACAAACAGCACCGTACTGATGTAGCCATGACAGTGTGGATTTTAGACGCTAAAGGTTTGCCAACAAAGCCAAAAAAGAGTTACTATTGTGAAGTCCTTCTGGACAAGAGCCTTTATTCCAGAACAACTCCAAAGACGAAAGCAGAAAGTCTTTTCTGGGGCGAAAGTTTTGTCTTTGAGGATTTGCCAGACTTTGTCAAACTTACAGTAAATATCTACAAAGACAATGACTCTAAAAACAAGAAAGGCAAGAGAAAGATTTTAGGCACGGTTGATATCATGGTTGAGGATCTTGACAACAACCAAGAAACAGAAAGATGGTTTCCCGTTACCTTGACGACTAGGAAAGGAACCAATGGCGAGACACCAAGTATACGACTGAAAATCAAATACCAGAGAGTCTGTATTTTACCGATCAAAGCCTACAGCGAAATTCTATCGTACATCAAAGATCATTACATGCTGTTGTGTGAAACTCTTGAGTCTGCCGTTAGCTCGAAAGTTAAGGACGAAATTGCCGGAGTTATTCTGAGAGTTCTAGAACCAACTGGTAAAGCACGAGAATTCTTAGTGGATATTGTAATAAATGAAGTCAATAAACTTGCGGATGAGAATTTGATCTTCCGAGGAAACTCCTTCGCTACCAAAGCAATGGATACATACATGAAGATGGTCGGAGAATCGTATCTACAAGAAACTCTCTGCGACTTTATATTGGCGGTGTACAACACGAACGAAGATTGCGAAGTCGACCCGTCCAAGTCCACCACAGGAAACCTGGAAAGTAAAAGAGAAAGTCTCAAATCCTTTGTTGAGAAAGCGTGGCTAAATATTTTAAACTCGTCCAACTATTTTCCGAGGGATCTTCAGGAGACGTTTCATAGGTTTCAGCAACGCTGCGCAACTATGAATCGAAACAAGGATTTAAGCAATAATTTAATCAGCTCGTCCATTTTTCTACGGTTCTTGTGTCCAGCGATCTTATCACCAAGTTTATTCCACCTGGTTCAAGAATATCCAAACGAGAAGACATCAAGGACTCTGACTCTAATCGCTAAAGTCATCCAAAACTTAGCCAACTTTACCAGgtTTGGAGGCAAAGAAGAATACATGGGtttcatgaatgaatttgtggAAAACAATTTCGAGAAAATGAAGCATTTTTTGGAGAGGATTTCGACGCAGCCCGAAGGTCAAATAAATCGTTTTGACGCAGGCATTGATCATGGCAGGGAATTAAGCGTGTTGTATCAAACACTGAAAGAACAAATCAGCAAACTTGACGAGAACTCCAAGAACAAACTTGGGTCACTCCAGTTCGTACTCGACTCGTTAGATGAAGCTTACAAGGAGTTTGAAGGCTTTCACGGCCATGACTCCGGACCGCCCAGAAAGTGGGCCTCGTCGTCAGATCTgataaatgaacaaaagaaagacaATATAACCCTTACGCCCGTACAAAGTCATAAACAAACCCGACGACAACAAAGTTCTCCGACAACAGGCCGAGAATCACCCCAATGGCAAACGACCCCTCGTCGAGGCCAACATCGACTACTTCCGACCCCTCAGCATCTAATCGTAGCTCCCGAAGATATCATCGTAGCATCTCCGTACGATCTCGAAACTCGCCGGTTTTCGTCTCCCATATTAGGTATTACCCAAGAAGAAGAGGATTTGTCATCCACTAGCTCGGCACATCTTCGGAGACATTCGTATTTGAATGCTGTTAATGACGATGAAATTTCGCCGCCTCGAAGATACACCGAAGGACGGGCGATTTTCAATAAGAAGGCTCGGAAACTCAAGTCGACCTCACTTCATAAAACTCTAAGTGGAAGCGATGTTGAAAGCCTTGATAGTTTCTCTAGTGGCGAGATACAACGTAGTGATCCAAAACGCGATCTATCGCAGTATTTATCAGAAAAACCGCAAAACTCTGGTAAACCCATTTCGCGTCAACGACCATGGTCCATGATAATCGATAGACCTCCTAGTTACCAATCAAGTCCTAAGCAACAAAGGCCCACAACACCCCCTATAATAACGGACCGTTCACGTACCCTCCCAATTGGGACCAGTTCACCAAGGACCCAACAGAAAGCGTCCCCTTTAGCAATCATTAACTCCATAACTCGTGGTCCTACAGAAAGAGACTCTGATCACGACCACTCCCCCGCCTCATCACCACGCCCACAACGACGAACCCCACAGCCGTCTCCTAGGTTACTCCACGTCCAATCAGATCATCTTTCCGCTTCAAAGAAATTATCGCGCACTCCATCAGCGACAAGTAGTAGTTCAAGTAGTAGTTGTGGGAGCTGGCGTAGTTCTAGTATTGGTAGTACTAGTGGAAGTACAAATAGAGGACGAAAACGACATGTATTGCCTACGACTCCTGACCTTAATGCACACAGAAAAGACTCAAATTCCACGACAGGGTCAAGAACTGAGGATGACTGTAGAGAAGATAATGTAATGAACAGAACAAAGGTGACTGAGGAAAAGGATAACCAGGAATTAGCCCGCGATCTAGAAGACACCAAACGAGCTCTCGCCTCGACTCATGAACAGCTTATTCTACAAGAATCCAGTACCCACAAACTTATCGCATCCTTCAAGGAACGCCTGGCAGAAACTGAGGAGAATCTTAAGAAAGTACGCGAGGAGAGGGATAAAGATGTCAAGGACTTGTTAGATAGACTTGTAATCGTGGAAAATGAGCTGGCAAAAGAACGTGaagaaatgcaagaaatgttgcaAGCCAAGCAGCTTATCATCGATGCTCAGGAAAAGAGAATCAAATCTCTGGACTCGACAAATGCGCGACTTGTTGCTACTTTGAATCAAATGAAATCACGAGAGACAGCGaaacaaaaacagaagaaaTTAGAGATCGATGAACGACAAGACCAATATGTATGA

Transcript

BRAKERFUXT00000023933

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12004 all species →	DAB2P_C	Disabled homolog 2-interacting protein, C-terminal domain	Domain	Interproscan
PF00616 all species →	RasGAP	GTPase-activator protein for Ras-like GTPase	Family	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR021887 all species →	Domain	Disabled homolog 2-interacting protein, C-terminal domain	Interproscan
IPR023152 all species →	Conserved_site	Ras GTPase-activating protein, conserved site	Interproscan
IPR001936 all species →	Domain	Ras GTPase-activating domain	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR039360 all species →	Family	Ras GTPase-activating protein	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10194 all species →	RAS GTPASE-ACTIVATING PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043087 all species →	Biological Process	regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERFUXP00000023933.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000023933.1 across 18 RNA-seq samples of Telmatactis stephensoni. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

0TPM > 0

6Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Mesentery	3	0	0.00	0.00
Club-tips	3	0	0.00	0.00
Actinopharynx	3	0	0.00	0.00
Tentacles	3	0	0.00	0.00
Pedal disc	3	0	0.00	0.00
Body column	3	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.