Gene detail

Detailed information of BRAKERFUXP00000023935.1 in Telmatactis stephensoni

Genomic Location: 000280F_pilon_pilon:448693...458050
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16050 all species →	CDC73_N	Paf1 complex subunit CDC73 N-terminal	Family	Interproscan
PF05179 all species →	CDC73_C	RNA pol II accessory factor, Cdc73 family, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038103 all species →	Homologous_superfamily	Cell division control protein 73, C-terminal domain superfamily	Interproscan
IPR007852 all species →	Family	Cdc73/Parafibromin	Interproscan
IPR032041 all species →	Domain	Paf1 complex subunit Cdc73, N-terminal domain	Interproscan
IPR031336 all species →	Domain	Cell division control protein 73, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12466 all species →	CDC73 DOMAIN PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000993 all species →	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0016593 all species →	Cellular Component	Cdc73/Paf1 complex	Interproscan
GO:0032968 all species →	Biological Process	positive regulation of transcription elongation by RNA polymerase II	Interproscan
GO:0034402 all species →	Biological Process	obsolete recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15175	CDC73; parafibromin	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000023935.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

13TPM > 0

6Conditions

0.5Max TPM

0.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	2	0.20	0.35
Club-tips	3	3	0.29	0.43
Actinopharynx	3	1	0.16	0.49
Tentacles	3	2	0.13	0.22
Pedal disc	3	3	0.32	0.46
Body column	3	2	0.14	0.31

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.35
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.26
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.43
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.26
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.16
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.49
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.00
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.00
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.22
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.17
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.46
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.31
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.19
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	0.31
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	0.12
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	0.00

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.