Gene detail

Detailed information of BRAKERFUXP00000024719.1 in Telmatactis stephensoni

Genomic Location: 000267F_pilon_pilon:471412...477454
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000024719

ATGCTGTTAACAGTGCATGCCATAAATGGCAAGACACTCATAGCAAATGTAAGCATGTCTGGTATCAAAGGCAAAGTTATGTTTACACAAGCCTCCAACTCAGATCCAACAACCATCAATTTTAACCTTGATGGCGTCTCTGAAGAACTGACCGTTCAGATCCACAGCCTGCCCATGATATACCAAGGTGGTGCCAGCACAAGCTGCAGTAGTCTGGCTATTGGCACAGTGTATGACCCCACCAATTCAGGTCCTTGTTCCATGTCACAAAAGCAAAATTGTTCCATTGGTGATATTTCTGGCAGGTTTGGTAACCTTAACCAGACTAGCTCCAAAACAAACTTCACTGATTCAAATTTACCACTTAGCGGAAAGAATAGTATCTATAGCAGGACTATAGTGTTGATGACAACATCAGGTGTGGCTAAGGCATGTGCTTTGGTAACAAGTGAAAACCTTGGGCTCACTGCAGTAGCGCATTTTAAGGGACCTGTTGCTGGGACTGTGTACCTTAGGCAAGCAAAGGAACAAGAGGCATCATTGTTGTATGCCAATTTGTTCTTTGTAAATGATTCAGTAGCCAAGAGAGAGTTCTTCTTGGAAATCCATAACAAAAAAGTAAGTCAGAAATTTACCTCATCACAGTGTGCAGATGTTGGAGGGGTTTTTAATCCCTACGGAATTGCAAACAAAGACAACTGCAAGAATACTAATCATGCTGGCTGCCCCGTTGGTGACCTCAAGACTAAACTTGGTTATGTCAATGTGTCAGAAGCAACATCAAGCCTTTCTAACACCCAAGTGGCATACACTGATGTAAACTTACCAGTTCTTGGTGGAAAAACTGTTATTGGTCATTCTATAGTGCTATATGCTCGTGATGACCCTGACACACCCATAGCTTGTGCAAATATCCTCAAAATCCTGATGAGAACTGCCAAGGCAACATTCACTGCTGAAGCCACTGAAGGTGTTGCAGGAACATACACATTTTCACAGAAATCTCCTTTTGATCCAACCGATGTTGAAATTAAGATTTCAAACTTGAGAAGCAAAGCAGAGGGTTTTCATGTTCATGAGTACCCTAACCCAAGCTATAAACAAATCACAGATAATTCAAAGGCTTGTAGTGCAGATGCTGCTGGAGGAACATTTGACCAGTATGAGATTGGTGACTTGTCAGCCAAATATGGCTCCTTCTTAAACCAAGACAAGCGTGATAGCAGTTACACTGATTTGAATATACCCTTGTTTGGAAAGAATAGCATTATTGGTCGATCCATTGTCAtccattttcttaaaaaagatGGAAACAAGAGATGGGTCTGCAGGAACATTGAAGTGGCTATGTCATGGACTTCATTAATTGTAACACGCAGTCAATTTACTGGTCCTGACATTGAAGGGGATATCATTATGGCACAGTATGTTACAACCACTACAGATGCAGCCCCATTCGATACAGCCATCTATCTTGACCTAGTTCACACGAATGGACAGAAGCTGCATCGGACGATTGCTTCGCCTGGtggtaatggtgatgatgatgatgatgattacgacgatgatgatgatgatgatgatgatgatattggtTTGTTTCAGACAGCAAATCATAACTGGCATGTACATGAGAAGCGAGTAGGAGACGACATGGCAAAGGATCCTGGTAGATGCCAAAGTCCCGGCCCTCACTTTAACCCCTATAACGTTTACGTAAAGGGTAATTATGCCAACACATGCAAACCCGACAACCCACTTAGATGTGAACTTGGTGATACTTCAGCTAAAACCTCCCAGTACTCTCTTGGTTCTGGTCCTAAGTTTTATACGGACATCGACACGCCTCTATCTGGTGATAATTTAGCAGTTGTTGATAGGAGTATCGTCATGCATGAGAAGGACGGGGGACCTGATCGTAAAGGATGCGCTGATATCAAACGTTTTAAAGAACAGGCCCCGTCAAGTGCCAGTAGTTTATCCACTACGGTGTCACAAATTGTGACTGGATTGTTCATCGGTCTACTAATGATGATTTAA

Transcript

BRAKERFUXT00000024719

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00080 all species →	Sod_Cu	Copper/zinc superoxide dismutase (SODC)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036423 all species →	Homologous_superfamily	Superoxide dismutase-like, copper/zinc binding domain superfamily	Interproscan
IPR053257 all species →	Family	Cu-only superoxide dismutase	Interproscan
IPR001424 all species →	Domain	Superoxide dismutase, copper/zinc binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20910 all species →	AGAP001623-PA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006801 all species →	Biological Process	superoxide metabolic process	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERFUXP00000024719.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000024719.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

18TPM > 0

6Conditions

32.3Max TPM

17.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	3	17.77	21.69
Club-tips	3	3	23.69	32.29
Actinopharynx	3	3	15.07	25.34
Tentacles	3	3	23.96	29.87
Pedal disc	3	3	13.72	15.64
Body column	3	3	12.74	15.39

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	21.69
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	20.66
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	10.95
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	32.29
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	22.42
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	16.35
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	25.34
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	10.23
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	9.64
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	29.87
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	22.47
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	19.54
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	15.64
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	15.14
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	10.39
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	15.39
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	12.54
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	10.28

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.