Gene detail

Detailed information of BRAKERFUXP00000027079.1 in Telmatactis stephensoni

Genomic Location: 000237F_pilon_pilon:591999...602030
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02544 all species →	Steroid_dh	3-oxo-5-alpha-steroid 4-dehydrogenase	Family	Interproscan
PF21696 all species →	TECR_N	TECR, ubiquitin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039357 all species →	Family	3-oxo-5-alpha-steroid 4-dehydrogenase/very-long-chain enoyl-CoA reductase	Interproscan
IPR001104 all species →	Domain	3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR049127 all species →	Domain	TECR-like, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10556 all species →	3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0042761 all species →	Biological Process	very long-chain fatty acid biosynthetic process	Interproscan
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10258	TER, TSC13, CER10; very-long-chain enoyl-CoA reductase	EC:1.3.1.93	Lipid biosynthesis proteins	ko01004	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000027079.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

17TPM > 0

6Conditions

16.2Max TPM

5.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	3	9.18	16.19
Club-tips	3	3	5.39	6.88
Actinopharynx	3	2	2.69	5.68
Tentacles	3	3	5.49	6.51
Pedal disc	3	3	4.27	4.91
Body column	3	3	4.20	5.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	16.19
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	5.93
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	5.41
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	6.88
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	6.04
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	3.26
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	5.68
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	2.39
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.00
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	6.51
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	5.76
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	4.22
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	4.91
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	4.24
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	3.66
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	5.75
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	4.08
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	2.77

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.