Gene detail

Detailed information of BRAKERFUXP00000027084.1 in Telmatactis stephensoni

Genomic Location: 000237F_pilon_pilon:354072...377991
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000027084

ATGAATGAAAGTATCCCAATCGCAACTTTGTCAGGGATTACAAGTTTGACAAACCTGCTTGCAGAGCTTCCTTTACCGTGTCCTTTACCATCAAAGACACAGGAAAGCCTTTTCAGTAACTCTAACATCGAAGAGGAAGCGAAGAAAGTTGTTAGTCGTCCTGATGCAGCCGTCATTCATCAAATCAAGCAAGCTCTACGAAGCTGCAAATTTACCTCAGATGAAATCATGCTTAAAGATGAAGTGACCAACAACATCCATGGTTCATCAACAAGAGGCAATCAGTCAGTTCTTCTAAATGCTCTATTAAGCCAGGACTCTCAGTTGTTTGTTCAAGAAAATGATAAACTGGAACTTGAAGACTTGCTAGGAATTCCTCCATTATGTCATGCACCTCTTTCTCCCAAACTTTCACCCAATCAAACTGTACCACTATCAGCATCCCCAATGTATGCTGGATCGCCACCTGGATTGGCTCAAGCCAACTCACCATATCAGACATTACATCCAAGTCCATCTGGTATTGGAAGTCCACAACAGCAACCTATGGCATCTTACACTCCAGTACCCCAAGCATTTTCTCCACAAAGAACTTCACAGTCAAATATCATTGGTTCAAGTCATCAGGTACCATAtaacccaccaccaccacatttACAAGCAAGTAATACAGGTCAACAGTCAGTGTCCCCTGTCAAGACCAGAAGAATGAGACAAAGCTTATCACATTTATCCCCAAACCAAACTTCTCCACCTCAATATCAAACACCAACCCAGCAAACTGGTAGCCATACAGTGCTACAAACATCACCAAGGGCAAGGCAAGCTAACCCTTCTGTGAATAGAAGCATCACATCAACATCAGGTCTTAGTCATATGAACTTTGCTACACAACCTGCAAGTACATCACAATATTCTCCAGGATATAATAGTATCTCAGCTCTTGAAGCACTTGCCTCCAGTAATGGATTTTCTGTGGCATCTGATACCTTACAAAATGCATCATTTTCGCATTcttcaaaaattgtaaatagCACAAAATCTTCCAGTGAAAATATTCAGTGGCCAATGCAGCAAACATTTGGCCAAAGAACTGAAGATTCAGAACCAAAAAGTTGCTCAATGGATGGACAGAATTCTGCCATTGACATGATTGACTTGAATAGTCAGTTTTCTTTGGATAGGTGTAACCTGGATGTTGGCTCCAATATTAATTCTTGTCAATATAATGTAGATTCTACCATCACAGAAACAATTGACTCTGGTATTTCCCTTCCTGCAGTGAAAAAAGGATCATCAAAGAAAAAACACATGGACAGATCAATaagtaaaacaaataaacatcATGAAAAGGAGATTATTAAAGACTATAGCTATGATGATAATACTTCATTTACAAAAAGGAATTACAACTCTGAAGAAAATCAGACTTGTTTAAACCACACTGATGAAGATTTAGGAGAAACACCCATCAAAAGCAATACAATAGACTTGAGTACGTCAGTTGATTTAGTGTACCTAGATGGAGAGCAGCCCAATCAAGAAGTGAAGTTATCCTCTGGGTATACACCTCTTAAGGAGCTTCAGTTATGTATTCCTAAGTTGGTcattacaaaaattaaagaaaggagAGGATCCAAAGAAATAGAAACTCATAGTGTAAGAACTATAATGCCTGGAGATGAAGATCATTCATTcatgaaaaagaagagaaaatcaAGTGAAGAGATTGATAAACCAAGTGATGCTGAATTTGAAAAAGttcggccaaagaagaaaaagaaggcaaaggcaaagaaaCCACCAGAACCAGTAGATACTGATGaaattaTGGAGACGGCAACATTTAAAAGATTTGCTACTGCTCTAGAGAATTTGTTTGAGTTTGATGATGAATGTGGAGTCTCTTACACAACTGAGATAGATGATGAAGAACCTGCATCAGAAACTCTTGCTTCAAGAACAGAAATATCTGAGCTCTACACAGAAACTGCAAAACTGAAATCATTAAAAGTTATACATCAAGTTCCTAGTGATCAGCTGATGAGGTTAATCTCAATCATGGAAAGACACATCAGGGATGGTTTGCTTCTAAAGCTAAGTGGTGATCAGGAAGATGATGAAGAACAGAAATTATGGCGAGATTTGTGTCTTGATAGAATGATACGATCTGTGGAGTCTTCCCTTGTGGTGTTGAATGTGTTGACAGCAGAGGATGTACCTAAGCAGTTATATTTAGAAGAAGTGATAGAGAGAATCATTAGGCTTGTCAAGTTTCATTTGACTAATACTATTTTCCCTGAATACGATCCTGTATACAGAGATCCTGAGTCTAAAGATTCTGTTTTTGTTCCCAAGTCAAAGAGGACAAAAAGTACACTCCCCAAAATTCGACTTCTCACTTCATTTTATAACAAAATGTGTGAATTGGTGTCTCAGTTAGGTGATCTTGTGGATATTCAGTCTCTTACTGATACATCTATTTTACAGATTTCGAGTTTGGGAACTGCTCCATTTTTTGTAGAAAACATCAGTGATTTACAGCATAGTTCCTTAAAACTAGTACGATCAGTGTTTAGGAGATATGTCAAACACAGAGATTTGATCTTAGAGGATATATTTGCATCTTTAGCAAGACTTCCATCAAGCAAGAGAAACATGAGAAGTTACAGGTTAAATGGTGATGAGTCAATCCAGATGGTCACAGCTCTGGTGTTGCAGCTTATTCAATGTTCTGTCAAGATTCCAAACAAGGATGAAAGTCAGTCATTAACAACGACAGCAGAAGGAGAAGAGAATGGAGAGGAGCCAGTCAAGGTTGACCAAGATATAATCATTTGTAATTCCTATGAAAATGCTCTCAGAACAGCAAAGAATTTTCTGTCTATGTTCCTGAACAAgTGCAGCAGTGTTGGTAAAGATGAGGAGGATTTTAGACCTTTGTTTGAGAACTTTCTTCAAGACCTGTTGTTAATGCTTAATAAGCCAGACTGGCCAGTTGCAGAGGTGCTTTTAACACTATTAGGAAGACTCTTGATTGTGACCTTCAACAACAAGTCATTGGATGTCAGCCTCAGAGTTTCTTCCATTGATTACCTTGGTGTAGTTGCAGCCCATCTCAGAAAAGATGGTGTTATAAGTCATCAGCTGGAATTAGATAGCATCTCAGATATGTTAATTGATCTACTTGGTGAGACATCCGATGAATCTGATGAAGAAATTTCTAAATGGGATGAAAGATCACCTAAAAGAGTCCATGTGCTCAGAAAAGCTCTCTGTAGCTACCTGACAAATGAAGGCCAAAATGATGCTGCTTTAATGTTTGCCAAGAAGTTTTACATAGCTCAGTGGATACGTGATGCtcaaatagaaatagaaagagctATGAGAAATCCTTCAGACCTGCCATCAGACATTATGGAGGGTTTAAGCACATCCATTTCCTTTGGAGCTGATAGTATACAAAaatcagaagaagaaaaacaaaagttacACGAATTGCTTGATGACAGAATGAATAATATAAGATCTTCTCAGCACATGCTAGACTATGATAAAGCTTTGGTAGTATCTAGATATTTAGGATCTTCCAGATCTTTCTCCAAAAGTTTTGATGGATATCTTGGTCAGATTTTGCGTATTCTGAATGAAAATGTTGTTGCAATACGAACTAAAGCAATGAAAGCCCTCTCAGCTGTGGTCTCCGCTGACCCTTCAATCTTATCAAGGGATGACATGCAGAAAGGTGTCCACACCAGACTTGTTGATATGTCAACAAGTGTAAGAGAAGCTGCTGTGGAGCTGATTGGTCGTTTTGTTCTGAATAAGCCTGATCTCATCCATCAGTACTATGACATGATTGTTGAAAGAATCTTGGACACTGGCATCAGTGTAAGGAAAAGGGTCATCAAGATTTTAAGAGACATTTGTATAAGTCATCCAGATTTTCCAAAAGTCACTGAGATTTGTGTTAAGATCATCAGAAGGATTTCAGATGAAGAAGGAATCAAGGAACTTGTCACTAAAGTATTCCAGCAAATGTGGTTTACACCAGAGAAGGGAGTGCAGCAAGAAGTGTTACTAAAGCGTGTTGTGCAAATGACTGAGGTGGTATCTGCTTGTGGGGAGAACACTGACTGGTTTGAACAGCTTCTTGACAATTTACTTAGAAGTGATGAAGATTCAGTGGTCAAATCATCTGAAGAAGCCTGCAACCAAATAGTGCAGTGCCTTGTAGAAAACATTCTTCGCCAAGAAGAAAGTGTGATTGcTACATCTGAAGGACAAAGTTCAAGCAGTCAAAAACTGGTAGCCAGTTTAACAACTCTTTACCTGATGAGCAAGATTAAACCCCAATTGCTTGTGAACCATGGGGCCACTTTGCAGCCTTATCTCAGCACCAAGTGCAGTACACAAGGAGACTATCTAGTAATTCACAATGTTGCCAGGATACTAGAATTAGTAGTACCTCTTATGAAGCATCCGAGTGAAACCTTCTTGGCCAGTCTAGAAGAGGACTTGATGAGGCTTACTGTCAAGCATGGTCAGACTGTAGTACAAAGTTGCATTAGTTGTCTGGGTGCAGTTGTCAATAAAGTCACTCATAATATCAAACTTGTCAAAGATTATTTCCAGAAATACTATGGATTCTTAGTGAAAGCAAAGTTGGACCATTCCAAGAAAAACTGTACTAGCAGTCAAACTCATAAACCTACATTGCTGAGATCACTCTTCACTTTGGGACTATTATGTAAACATTTTGACTTTGATGGAgatgcaaaacttgaaaatcaGAGTTCAACAAGAGATAAAGTATTTGCTGTATACATCTATTTCTGCAAACATGAAGATGAGGAAGTTAGACAGAAAGCTATAAGTGGACTTGGTTTTTTCTGCATTAGATATGCAGAACTTTTGATGAAAGATGAGGCTAAGTGTCTTTATCAAGACATTTTATCACAACCAAATGTATCATCAAAGTTAAAATGGCAGGTTCTTAAGAACTTCCAAACTCATTTGCTAGAAGAAGAAAGGAGACTTAGGATACAAGATCATGAATGGAAAAAGCAGTCAGATAAAGAAAACTTGAAGGAGCTGGGTGACATGCAATCTGGACAAACCAGTGCAGTGATGCAAGTTTACTTGAAGGACATATTGGAAATGTTCTTTCATCAACAGAGTCAGCTGCGTACTGCAGCACTCACAGTTGTAAATTTAATCCTACGGCAAGGATTGGTACATCCTGTACAGtgtgttCCATACTTGATTGCTGCTGGCACAGATGTAGATCAACAGACAAGAATTAAATCTGACCAACAGCTGACTGACATAGACAACAAGTATTCTGGATTCATACAGATGAAGGCACTTGCTGGGACCAAGAAGTCATTTGAGCTTCAAAAGCTTATCCATGAGGGTAAAAATGAACCAATTCGAGGATACAGGAAGGATACTTCTTCAAGTCTTCTATCTCACATGTATTCAGTGGTACGAACCAGTCGCCAACCAAGACGGTCACTTTTGCAGTCACTTCTCAGAATGTTTGATGACCATAAGAAATGCAAGCTAGATTTACTGCTGTATGTGACTGACTCATTGGCATATTTCCCATATGTTATACAAGAGGAACCACTATTTATTATGCACCATATAGATACCGTGCTCTCAGTCTCTGGTGCTCACCTGCTGCAGGCTTTTAAAGAGACTCTCCTTCCAAAATCAAGACAAGTTGTAGAAGGTTTAGATCCATCAGCACCACCAGTtgtcattgatgatgatgacgatgagtCCATAGAGGCAATCATTGAGCGTATACCTGAAGATACTTCATTTGCTCAACACTGTGTGTCTGCACAAAAGTGTTTGCTGCTTCTGTTACTCAAAGAACACTTGAAAGAATTATTTGGGTTAACTGACAGCAAATGCCACAAATACTCCCCTTCAGCTCCAAGTAAGGCATATGACAAAAATGTCTCACGCAAACCAGGAGTTATTTTCAATCCTGAACAAGTTATAGACTATGTAGTTGACCCAAGGAAAGAGAGACCTAATGAAGAGCTTGCCAAAATATATTATGAGTTCAAATGTTTAATGATGAGAGTAGATCCACCAGATGACGATAGTGATGTTGACTCTACTGGTAGAGACAGCCCAGCTGTAGATGGACAACCTGTTGTTGATGCTGAGGGCAATGTTATAGTAAAGGCAGTAGTTACAccaaaaattaaagtaaaacccAGAAAAACACCTGCAAAGGGAAGAAAAACTCCTCCTGTCAGTGCCAAGCCCAAACCAAAgccaaaagcaaagaaaaaaaggagaaagatATCCTTACAACAAACTATATTATCTTACTCTAATACATGA

Transcript

BRAKERFUXT00000027084

Protein

BRAKERFUXP00000027084.1

MNESIPIATLSGITSLTNLLAELPLPCPLPSKTQESLFSNSNIEEEAKKVVSRPDAAVIHQIKQALRSCKFTSDEIMLKDEVTNNIHGSSTRGNQSVLLNALLSQDSQLFVQENDKLELEDLLGIPPLCHAPLSPKLSPNQTVPLSASPMYAGSPPGLAQANSPYQTLHPSPSGIGSPQQQPMASYTPVPQAFSPQRTSQSNIIGSSHQVPYNPPPPHLQASNTGQQSVSPVKTRRMRQSLSHLSPNQTSPPQYQTPTQQTGSHTVLQTSPRARQANPSVNRSITSTSGLSHMNFATQPASTSQYSPGYNSISALEALASSNGFSVASDTLQNASFSHSSKIVNSTKSSSENIQWPMQQTFGQRTEDSEPKSCSMDGQNSAIDMIDLNSQFSLDRCNLDVGSNINSCQYNVDSTITETIDSGISLPAVKKGSSKKKHMDRSISKTNKHHEKEIIKDYSYDDNTSFTKRNYNSEENQTCLNHTDEDLGETPIKSNTIDLSTSVDLVYLDGEQPNQEVKLSSGYTPLKELQLCIPKLVITKIKERRGSKEIETHSVRTIMPGDEDHSFMKKKRKSSEEIDKPSDAEFEKVRPKKKKKAKAKKPPEPVDTDEIMETATFKRFATALENLFEFDDECGVSYTTEIDDEEPASETLASRTEISELYTETAKLKSLKVIHQVPSDQLMRLISIMERHIRDGLLLKLSGDQEDDEEQKLWRDLCLDRMIRSVESSLVVLNVLTAEDVPKQLYLEEVIERIIRLVKFHLTNTIFPEYDPVYRDPESKDSVFVPKSKRTKSTLPKIRLLTSFYNKMCELVSQLGDLVDIQSLTDTSILQISSLGTAPFFVENISDLQHSSLKLVRSVFRRYVKHRDLILEDIFASLARLPSSKRNMRSYRLNGDESIQMVTALVLQLIQCSVKIPNKDESQSLTTTAEGEENGEEPVKVDQDIIICNSYENALRTAKNFLSMFLNKCSSVGKDEEDFRPLFENFLQDLLLMLNKPDWPVAEVLLTLLGRLLIVTFNNKSLDVSLRVSSIDYLGVVAAHLRKDGVISHQLELDSISDMLIDLLGETSDESDEEISKWDERSPKRVHVLRKALCSYLTNEGQNDAALMFAKKFYIAQWIRDAQIEIERAMRNPSDLPSDIMEGLSTSISFGADSIQKSEEEKQKLHELLDDRMNNIRSSQHMLDYDKALVVSRYLGSSRSFSKSFDGYLGQILRILNENVVAIRTKAMKALSAVVSADPSILSRDDMQKGVHTRLVDMSTSVREAAVELIGRFVLNKPDLIHQYYDMIVERILDTGISVRKRVIKILRDICISHPDFPKVTEICVKIIRRISDEEGIKELVTKVFQQMWFTPEKGVQQEVLLKRVVQMTEVVSACGENTDWFEQLLDNLLRSDEDSVVKSSEEACNQIVQCLVENILRQEESVIATSEGQSSSSQKLVASLTTLYLMSKIKPQLLVNHGATLQPYLSTKCSTQGDYLVIHNVARILELVVPLMKHPSETFLASLEEDLMRLTVKHGQTVVQSCISCLGAVVNKVTHNIKLVKDYFQKYYGFLVKAKLDHSKKNCTSSQTHKPTLLRSLFTLGLLCKHFDFDGDAKLENQSSTRDKVFAVYIYFCKHEDEEVRQKAISGLGFFCIRYAELLMKDEAKCLYQDILSQPNVSSKLKWQVLKNFQTHLLEEERRLRIQDHEWKKQSDKENLKELGDMQSGQTSAVMQVYLKDILEMFFHQQSQLRTAALTVVNLILRQGLVHPVQCVPYLIAAGTDVDQQTRIKSDQQLTDIDNKYSGFIQMKALAGTKKSFELQKLIHEGKNEPIRGYRKDTSSSLLSHMYSVVRTSRQPRRSLLQSLLRMFDDHKKCKLDLLLYVTDSLAYFPYVIQEEPLFIMHHIDTVLSVSGAHLLQAFKETLLPKSRQVVEGLDPSAPPVVIDDDDDESIEAIIERIPEDTSFAQHCVSAQKCLLLLLLKEHLKELFGLTDSKCHKYSPSAPSKAYDKNVSRKPGVIFNPEQVIDYVVDPRKERPNEELAKIYYEFKCLMMRVDPPDDDSDVDSTGRDSPAVDGQPVVDAEGNVIVKAVVTPKIKVKPRKTPAKGRKTPPVSAKPKPKPKAKKKRRKISLQQTILSYSNT

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002809 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12830 all species →	Nipped-B_C	Sister chromatid cohesion C-terminus	Repeat	Interproscan
PF12765 all species →	Cohesin_HEAT	HEAT repeat associated with sister chromatid cohesion	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR033031 all species →	Family	Scc2/Nipped-B family	Interproscan
IPR024986 all species →	Domain	Sister chromatid cohesion C-terminal domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR026003 all species →	Repeat	HEAT repeat associated with sister chromatid cohesion protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21704 all species →	NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0034087 all species →	Biological Process	establishment of mitotic sister chromatid cohesion	Interproscan
GO:0061780 all species →	Biological Process	obsolete mitotic cohesin loading	Interproscan
GO:0071169 all species →	Biological Process	establishment of protein localization to chromatin	Interproscan
GO:0090694 all species →	Cellular Component	Scc2-Scc4 cohesin loading complex	Interproscan
GO:1990414 all species →	Biological Process	replication-born double-strand break repair via sister chromatid exchange	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06672	SCC2, NIPBL; cohesin loading factor subunit SCC2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000027084.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

17TPM > 0

6Conditions

6.6Max TPM

3.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	2	2.77	4.45
Club-tips	3	3	1.67	2.05
Actinopharynx	3	3	3.23	3.59
Tentacles	3	3	3.83	6.64
Pedal disc	3	3	3.44	5.24
Body column	3	3	2.92	5.38

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	4.45
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	3.87
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	2.05
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	1.51
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	1.45
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	3.59
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	3.42
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	2.67
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	6.64
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	3.27
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	1.59
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	5.24
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	3.56
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	1.52
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	5.38
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	1.84
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	1.54

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.