Gene detail

Detailed information of BRAKERFUXP00000027131.1 in Telmatactis stephensoni

Genomic Location: 000234F_pilon_pilon:85597...100638
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000027131

ATGGGAAAGCCTAAGAAAGGAGCGAAAAAGAAGGCTGGTGACGATTGGGAGGATGAAGTTCTAAATGAAATAGAGTCAATGAATGGAACAGCAGATGGAGCCAGTAAAGAAGCACCTAATGTGCAAACAAAGTCCTCCAGTAAATTCATGGCCCTAGATGTTGAAGAACCCAGTGAGAATGGTGAGCAAGAAGAACTTTCTGCATCAGCAAAgactgaacaaaagaaaaataaaaaagataagaaaaagaagaacatGTTTGATGCTCTAGAAGTTGAAGATGTTGATATTCCAGAGACTGTAGAATCTGATACAATTAACAAAACTACAGATATCATGGAAGAGGATGAAATGACTTCTAAAAAGCCtaaaaaagggaagaaaagtaaaaagaaatttgATATAGATGAtcttgatgaagatgatgatgatgaagaatcAGAAACTGTTAAAAAAGATCAACCAAAAGTTAAAAAAGATATAATGGTAAAAGCTACTGATAGTGTGCCAAAGGAAGGAGAAGAAGAGAATGATGGTGATGAAGAAGGAGGTCCAGTTGTTAAAACTGCAGCTCAGAAGCGtgcagaaaagaaagaaagggagaaaaagaaaagagctaTGGAAAAAGAGAAACAGAAACAAAAGGACAAAAAGTCTGCTAAAGCCAATGAAGTAGAAGAAACTATGGAAGTTCAAACGGAAGATACACCAGGAAAGGAGAAGAAAGAAGAGGATGTCAAAGTAGATGCACCTCAAGAAACAGCTAAAATTGAAGAGAAACCTGGGACGCCAGGAAAACCTGATGATAACCAAGAGAAAGGGCCAGAGGAAAATAAAGAAGGTGATGAGGAGGAAGAAGGAActgaagacaaaaagaaaaagaagaaaaagaaaaagaaaaaaggtgaagaggaagaaaaaaagacaaagaaaccAAACAAGGCTTTAGTAAAACAGATGCAACAACAGTTAGAACAGCTTCGtttagaagaagaaagaaaaatgaaagaagaagaagaaaagctaCGTGCCTTGGAAGAGGCAGAAAATAGAAGACTTGAGAAACTTCgacttgaaaaagaaagaaaagaaaagaagaagcaGAAAGAAAAGGAAAGAAAAGAGAGGCAACGGAAAGAAGGAAAGCTGCTTACTAAGAGTcagaaagaacaaaaagcaaaacaacaagcGATGTTAGAAGCTATGAGACAGCAAGgaattgaaattcctgcattGAGCAATCAAGCACAAGATGCTGTAAAGAGGCCTGTCAGATATGGCACCAAGAAACCAAAGaacaaacagcaacaacaacaacagcaacaacaagaaaatgaagaacCCAGAGATGTTGAAAtgcaagatgatgatgatgaaaatgatcaaGAAATCAAAACAGaTGATGCAAAGGAAGATGTCAATGTTGTAGTAGAAAAAGAGAaacagaaagaagaagaaaaagtggAGGAAGAGGTCAAAGATGCATGGGATGTTGAAACTGAAAGTGAAGATGAAAAAGAAGATGGAAAAGAGAAAGATGTTGTCAAGGAAAAAGAGTCTGAAAAACCTACAGATGAAAAGGAAGAGAGCAGCAGTGAAGAAACAGAAGAAAGTAGTAGTGAGGAGacagaagatgaagaagaggatgaagaggaagaagaagaagaggaagagtcTGAATCTGAAGATGACAAAGAACTTCTAAAATCAGAAAGTGTCAGTGAAAGAatacagaaaagaaaagtacaAGCAGAGTTGAAACGTAGCACAGATGACTTGAGATCTCCTGTCATTTGTGTACTTGGTCATGTAGATACTGGGAAGACAAAGATTCTTGACAAAATAAGACACACACATGTACAAGATGGAGAGGCAGGAGGTATCACACAGCAAATAGGTGCTACTATGGTACCACAAGATGCTATTAGGAAACAGACTTCAATGATTAAAGAGTTTCAAGATTTTGATATAAAAATCCCAGGCCTTCTTATCATTGACACTCCTGGTCACGAGTCCTTCAGTAATCTGCGTAATCGTGGATCATCCCTTTGTGACATGGCTATTTTAGTTGTTGATATTATGCATGGATTGGAGCCTCAAACTATAGAATCAATTAACCTTCTCAAGGCAAAGAAAACACCGTTTGTTGTGGCTCTCAACAAGATTGATAGGTTGTTTGAGTGGAAACGAGGACCTGACTCCAACATCATGAATAcaattaagaaacaaaaaagacaCACCAAGCAAGAATTTGAAGAGAGAGTCAAAGTAGTCATCCAAGAATTTGCTGAGCAGAGTTTGAATGCAGCCTTATACTATGAAAATAAAGATACAAGATCATATGTGTCTTTGATTCCTACATCTGCTCACTCTGGTGATGGCATGGGTGACCTGATATCACAAGTTGTCAACCTTACTCAAACCAGACTAACAGACAAATTAGCTTATTCTGAGTACCTGGATGGTATTGTCTTGGAGGTTAAAGCATTACCTGGTCTTGGTACCACCATTGATGTAATCCTGGTCAATGGTACTCTAAGAGAAAGCGACACCCTGGTCCTTCCTGGTATTGATGGACCTATAGTTACACAGATAAGAGCACTTCTAACTCCACAACCACTCAAAGAGTTACGAGTAAAGAACCAGTATATCACCCATAAAGAACTACGGGCTGCACAGGGAGTCAAGATTGCAGCCAAAGACCTGGAAAAGGCGTTGGCTGGTGTACCAATTATGGTTGCTGAGCATGAAGATGAAATTGAATATTGTAAGAATGAAGTATCCTCAATAATGTCAGAGGCACTTAAAGCCATTCGTCTATCAGACAGAGGGGTCTACGTTCAAGCGTCGACTCTAGGGTCATTAGAGGCTCTCTTGGAATTCTTGAAAACCTCCAAAATTCCGTATGCAGGTGTCAATATTGGTCCAGTCCACAAGAAAGACGTCATGAAATGCTCCATTATGCTGGAACACGATGTCCAGTTTGCTGTTATTCTGGCTTTTGATGTCAAGATCGAAAGAGAAGCACAAGAATTAGCTGACAGTTTAGGAGTCAAGATATTTTCTGCAGAGATCATCTATCACTTGTTTGATAAATTTATAGCATACAGAGAGGAGCAAAAACGCAAAAAGAGAGATGAGTTCAAGAACATTGCTGTGTTCCCTTGCAAGCTACGTATTCTACCCCAACACATCTTCAACACCAGAGACCCTATTATCGTAGGTGTGACTATAGAGGCTGGTATCGTCAAGGAAGGCACGCCCGTCTGCGTGCCATCCAAAAATTTTATTGACGTTGGTGTTGTATCAAGTATTGAAACCAATCACAAAAACATTCCTGAAGCTCGTAAAGGAATGGAAGTCTGTCTGAAGATAGAAAATATTCCAGGAGAGACACCAAAACTGTATGGAAGACATTTTGATCACGAAGATCTTCTTGTCAGTAAAATAAGTCGTGAATCTATAGATGCTGTCAAAGAATATTTCAGAGAAGACCTTCAGAGGAGCGATTGGCAGCTGATGATTGAACTCAAGAAGCTTTTCCAGATTCTGTAA

Transcript

BRAKERFUXT00000027131

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009 all species →	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF11987 all species →	IF-2	Translation-initiation factor 2	Domain	Interproscan
PF14578 all species →	GTP_EFTU_D4	Elongation factor Tu domain 4	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036925 all species →	Homologous_superfamily	Translation initiation factor IF-2, domain 3 superfamily	Interproscan
IPR000795 all species →	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR015760 all species →	Family	Translation initiation factor IF- 2	Interproscan
IPR023115 all species →	Domain	Translation initiation factor IF- 2, domain 3	Interproscan
IPR009000 all species →	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR029459 all species →	Domain	Elongation factor Tu-type domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43381 all species →	TRANSLATION INITIATION FACTOR IF-2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03243	EIF5B; translation initiation factor 5B	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000027131.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

2TPM > 0

6Conditions

0.2Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	0	0.00	0.00
Club-tips	3	0	0.00	0.00
Actinopharynx	3	2	0.09	0.15
Tentacles	3	0	0.00	0.00
Pedal disc	3	0	0.00	0.00
Body column	3	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.15
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.10
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.00
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.00
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.00
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.00
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	0.00
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	0.00
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	0.00

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.