Gene detail

Detailed information of BRAKERFUXP00000027232.1 in Telmatactis stephensoni

Genomic Location: 000234F_pilon_pilon:32357...42275
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000027232

ATGGACAACCATTTATGTACAGTATCTGATGCCACAAACCATATAATACTGAAGAAACGTGCTACTGCAGAGCAACTGATCAAGAATTATTTCTACCAGCTGACCGATGGCTGTGGTGTAGAAGAttgtaaaaatgaaaactgCGCTTCAAATGGTCGACTAAACCTTACTAGGAATGATGCTGCTGCTCTTGCTTTAAGGCTCTTTCAAGAGAGAGCTCAGCTGTGTAGCAACATCTTAGCAAAGAACCATCACAAAGGACCAGATACCAATCCAGACTCACCATTTTTCACAGAAGCATCAGTTCTATCCATGATCAAATCTTGCAAAGATGCTGGAAATTATAAAGAACTAGTTCACAGCATTGGTAAAGTGTTATCAGATCCAGAGTCTTTAAACAAAAGTTTCTTGTTAGCAGAACCCAAGGTGTTAGAGGGTGCAACCCTTTTTGTGGATATTGAGGCAGTACGAAGAGTGTATCATGCACTGTTTGAAATCGGTGATTCTTCAGTAGAGAATGCTTTGATAAACTCATTAGAAGCATTATCAACAGCTGTTGAATTGGAAATTCGTTTCAAAAACCCATGCAAAGATCGACGTTACTTGAACCAATTTATCATCATATTGGAGAACACTATGTTACAGAGCCCTGAATACTTGGAACGAGCTCTGCCTAGCTTTTTGAAAATCCTTTGCCTCTTACCAGTACCTGCTCAAGCCCAACTAGTGAGAATTTGGTGTACTTTCCCTATGGAGAACATTCGTCACATGGTCCAAACACTTCAACAACTAATTACATACCAGGTACTTACAGGACCATGTACCGTCAATCACATACCAGTTCATGATGACGCAGTGATAGTCAACAGTGCCAAAGCCatgaaacttttgtattttgtcaGCCTTATTGAAGGAGATAAAAGAAATCCAATTGATGGAGGTCATCAAGAGAATAATATTCTAGATTCTATATCAGCAAATAGTTCTTTTTTTCAAGATCCACTGGTCAGAGAACTACAGCTAAAAGCTTATGACTGTAAACAACCACTCTTGGCTTATGAAGAATTTGTAAATGAACCACTTAATGATCATATAGAAGTCGACCGAGACTATACTCATTTTAAGagtgaacaacaacaaaaattttcatTTCTGAACCACTCTTTTTTACTTAGTACTGCTACTAAAGGGTTAGGATTGTTTTATGATAACCGGGTAAGAATGTACAGTGAAAGAAGATTAACCATGTTGTATAGCCTTGTCCATGGACATCAGCATGCTCCTTTTCTTCGTCTGAAAGTAAGGCGGGACAATCTGATAGATGATGCACTGGTTAGGCTTGAGATGGCTGCTCAAGACAACCCACTAGACCTCAAAAAACAGCTTGTTGTTGAGTTTGAAGGTGAACAAGGAATTGATGAAGGAGGAGTTTCTAAAGAGTTCTTCCAGCTGGTTGTTGAAGAAATCTTCAATCCTGATTATGGCATGTTCACCTATGATGCTGAATCAAGAATAACATGGTTTAATCCTACATCATTTGAAAGTGATGCACAGTTTCGATTGATTGGACTTGTTGTTGGCTTGGCCATTTACAACAATATCATACTAGATATTCACTTTCCAATGGTTGTCTACAGAAAATTATTTGGTAAACATGGAACATTTGAAGATCTGAAGGATTCCCATCCAACACTGTACAAAAGCTTGAAAACATTATTGGAATACAATGGAAATGTACAAGAAGACTTGATGTGTACCTTTAAAATAGGCTATACTGATGTCTTTGGGTCTAGCTTAACTCATGATTTGAAGGACAATGGAGGGGATATCCCAGTAACCAATGACAACAGAGTGGAGTATGTCAACTTGTATGCTGATTTCATCTTGAACAAATCTATAGAGAAACAGTTCAATGCTTTCAAAACTGGCTTTGACATGGTAGTTGGTGACTCACCCCTAAAGGCATTTTTCAGACCAGATGAGGTGGAACTTCTAGTCTGTGGTAGCAAGGAACTTGACTTTGAAGCCCTTGAAAGTGTTACAGAATACGATGGTGGGCTGACCAAAGATTCTCCTCTCATTAAGTGGTTCTGGGAAGTGGTGCATAACTTCACCTTAGAACAAAAAAGACAACTGTTGATGTTCACCACAGGTAGTGATAGAGTGCCTGTTGGAGGACTCTCTAAAGTCAAACTGATTATTGCTAAAAATGGATCAGACTCTTCCAGGTTACCCACAGCTCACACTTGCTTCAATGTGCTGTTATTGCCTGAGTATTCCAGTAAGGAAAAGCTTGAAGAACGCTTGATGAAAGCAATAAGCAATGCTAAAGGCTTTGGCTTGCTGTAG

Transcript

BRAKERFUXT00000027232

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity\|HECT · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16558 all species →	AZUL	Amino-terminal Zinc-binding domain of ubiquitin ligase E3A	Domain	Interproscan
PF00632 all species →	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000569 all species →	Domain	HECT domain	Interproscan
IPR032353 all species →	Domain	Ubiquitin-protein ligase E3A, N-terminal zinc-binding domain	Interproscan
IPR044611 all species →	Family	Ubiquitin-protein ligase E3A/B/C-like	Interproscan
IPR042556 all species →	Homologous_superfamily	Ubiquitin-protein ligase E3A, N-terminal zinc-binding domain superfamily	Interproscan
IPR035983 all species →	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45700 all species →	UBIQUITIN-PROTEIN LIGASE E3C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10587	UBE3A, E6AP; ubiquitin-protein ligase E3 A	EC:2.3.2.26	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000027232.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

6TPM > 0

6Conditions

2.4Max TPM

0.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	1	0.04	0.13
Club-tips	3	0	0.00	0.00
Actinopharynx	3	0	0.00	0.00
Tentacles	3	1	0.11	0.33
Pedal disc	3	3	1.07	2.39
Body column	3	1	0.08	0.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.13
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.00
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.00
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.00
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.33
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	2.39
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.50
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.31
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	0.25
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	0.00
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	0.00

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.