Gene detail

Detailed information of BRAKERFUXP00000027320.1 in Telmatactis stephensoni

Genomic Location: 000231F_pilon_pilon:275065...278582
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02268 all species →	TFIIA_gamma_N	Transcription initiation factor IIA, gamma subunit, helical domain	Domain	Interproscan
PF02751 all species →	TFIIA_gamma_C	Transcription initiation factor IIA, gamma subunit	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009088 all species →	Homologous_superfamily	Transcription factor IIA, beta-barrel	Interproscan
IPR015871 all species →	Domain	Transcription initiation factor IIA, gamma subunit, C-terminal	Interproscan
IPR015872 all species →	Domain	Transcription initiation factor IIA, gamma subunit, N-terminal	Interproscan
IPR009083 all species →	Homologous_superfamily	Transcription factor IIA, alpha-helical domain	Interproscan
IPR003194 all species →	Family	Transcription initiation factor IIA, gamma subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10966 all species →	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005672 all species →	Cellular Component	transcription factor TFIIA complex	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0017025 all species →	Molecular Function	TBP-class protein binding	Interproscan
GO:0051123 all species →	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03123	TFIIA2, GTF2A2, TOA2; transcription initiation factor TFIIA small subunit	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000027320.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

16TPM > 0

6Conditions

2.5Max TPM

0.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	2	0.97	2.49
Club-tips	3	3	0.70	0.72
Actinopharynx	3	3	1.45	2.05
Tentacles	3	2	0.68	1.08
Pedal disc	3	3	0.94	1.61
Body column	3	3	0.83	1.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	2.49
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.42
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.72
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.71
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.67
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	2.05
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	1.47
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.82
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	1.08
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.97
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	1.61
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.78
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.42
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	1.25
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	1.06
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	0.18

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.